Query= MSMg01no377_a15.b1 MSMg01no377_a15.b1 CHROMAT_FILE:
MSMg01no377_a15.b1 PHD_FILE: MSMg01no377_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:05 2005
(539 letters)
>mm_chr9_27339886_27340824
Length = 939
Score = 758 bits (392), Expect = 0.0
Identities = 416/424 (98%)
Strand = Plus / Minus
Query: 5 gaattcctgtctctgggtataggtccaagtatttgaggtaaattggactccctaacctgg 64
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 424 gaattcctgtctctgggtataggtccaagtatttgaggtaaattggactccttaacctgg 365
Query: 65 gtgtgggtgtggagctgaagtcatgagggaagaacacaggtccagagaaggagatgtttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 364 gtgtgggtgtggagctgaagtcatgagggaagaacacaggtccagagaaggagatgtatt 305
Query: 125 gctcactacttggtagggactaaccatttggacccctaatcccattcagagcaagccctc 184
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 304 gctcactacttggtagggactaaccaattggacccctaatcccatttagagcaagccctc 245
Query: 185 agagtagcccttgtatcaggcccactatgctctaacttgctttctattgctgtgtaaaac 244
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 244 agagtagcccttgtatcaggcccactgtgctctaacttgctttctattgctgtgtaaaac 185
Query: 245 aacctggccaaaaagtaacttgaggagaaacgtgtttctatgcccaatagatccattgag 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 184 aacctggccaaaaagtaacttgaggagaaacgtgtttctatgcccaatagatccgttgag 125
Query: 305 aaaagacaacacagaagctcaaagcaggaagctgggggcagggactaagcagagaccaca 364
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 124 aaaagacaacacagaagctcaaagcaggaagctgggggcaggaactgagcagagaccaca 65
Query: 365 gagaaaggctgctgcaggcctgatggtttgcttgcttgctgtcctttagttacctttcat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gagaaaggctgctgcaggcctgatggtttgcttgcttgctgtcctttagttacctttcat 5
Query: 425 ctgc 428
||||
Sbjct: 4 ctgc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no377_a15.g1 MSMg01no377_a15.g1 CHROMAT_FILE:
MSMg01no377_a15.g1 PHD_FILE: MSMg01no377_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:05 2005
(469 letters)
>mm_chr9_27158683_27159551
Length = 869
Score = 822 bits (425), Expect = 0.0
Identities = 463/485 (95%), Gaps = 16/485 (3%)
Strand = Plus / Plus
Query: 1 tttgtagatt--aaaaaaaaatgcatcagtgcaaatctttttcatgactggtcatgtctt 58
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 185 tttgtagatttaaaaaaaaaatgcatcaatgcaaatctttttcatgactggtcatgtctt 244
Query: 59 aggatggggaagagttgggatatcctaactgcaaaatagttgggtagatcagcagtgggc 118
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 245 aggagggggaagagttgggatatcctaactgcaaaatagttgggtacatcagcagcgggc 304
Query: 119 cattgaacctcttagaggttctcctctgcagtgggtcaactgaagcagttagagattctt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cattgaacctcttagaggttctcctctgcagtgggtcaactgaagcagttagagattctt 364
Query: 179 aggcatgctggtgaagagtggtcagctttgcaccactggctaaggaattcaaccaaagca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aggcatgctggtgaagagtggtcagctttgcaccactggctaaggaattcaaccaaagca 424
Query: 239 gcacaagcgactcagcttgaagccagggcct--------------tcccatccagcttaa 284
||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 425 gcacaagcgactcagcttgaagccagggcctccaccatctacctttcccatccaacttaa 484
Query: 285 ctccatggcaacatgaatgagtgggcttgctgttcttttgggtcttaaagaaatttgccc 344
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 485 ctccatggcaacatgaatgagtaggcttgctgttcttttgggtcttaaagaaatttgccc 544
Query: 345 caccaatcccatctcccaccaacattgacttcctggatctgttttaaggaaatgcagagc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 caccaatcccatctcccaccaacattgacttcctggatctgttttaaggaaatgcagagc 604
Query: 405 aaactctcccttcacccacattcagaccatccaggctctctttccttcttgccccgactt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aaactctcccttcacccacattcagaccatccaggctctctttccttcttgccccgactt 664
Query: 465 gtgtg 469
|||||
Sbjct: 665 gtgtg 669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
