Query= MSMg01no377_j16.b1 MSMg01no377_j16.b1 CHROMAT_FILE:
MSMg01no377_j16.b1 PHD_FILE: MSMg01no377_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:50 2005
(457 letters)
>mm_chr9_27594549_27595408
Length = 860
Score = 735 bits (380), Expect = 0.0
Identities = 448/486 (92%), Gaps = 29/486 (5%)
Strand = Plus / Plus
Query: 1 ccatactatataaaagctctaccaccaaaccatatcagctgccctaaatggatgctttta 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 175 ccatactatataaaagctctaccaccaaaccatatcagctgccctaaattgatgctttta 234
Query: 61 ataacaagagtgtcctggccaggtatggtcaccatgagcagaggtgacataatgaatact 120
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 235 ataacaagagtgtcctggccaggtatggtcgccatgagcagaggtaacataatgaatact 294
Query: 121 agggcagtctgggctacagagtgagacactgttgaaaaaaaattctctatctctatctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 agggcagtctgggctacagagtgagacactgttgaaaaaaaattctctatctctatctct 354
Query: 181 atctctctctct--ctct--ctct--ctctatct--------------------atctct 214
|||||| ||||| |||| |||| |||||||| ||||||
Sbjct: 355 atctctatctctatctctatctctatctctatctctatctctatctctatctctatctct 414
Query: 215 atctctatctctatctatctctgcgtctatatatcacagtatcatat-ttttta--tata 271
|||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||
Sbjct: 415 atctctatctctatctatctctgcgtctatatatcacaatatcatagatttttaaatata 474
Query: 272 atatgcatatgaatatgaatccattttttaaaagataaggtcacatcactagtaatgaaa 331
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 atatacacatgaatatgaatccattttttaaaagataaggtcacatcactagtaatgaaa 534
Query: 332 ctgctatgagaatatgagctcaggtttttctgtttgcaaagtgaatttcttcctcaacag 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ctgctatgagaatatgagctcaggtttttctgtttgcaaagtgaatttcttcctcaacag 594
Query: 392 gagttattgtgttacagacattgtgatatcattgaatatactaaacaggaaagagtgaaa 451
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 595 gagttattgtgttacagacattgtgataccattgaatatactaaacaggaaagagtgaaa 654
Query: 452 gaacta 457
||||||
Sbjct: 655 gaacta 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 860
Length adjustment: 10
Effective length of query: 447
Effective length of database: 850
Effective search space: 379950
Effective search space used: 379950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no377_j16.g1 MSMg01no377_j16.g1 CHROMAT_FILE:
MSMg01no377_j16.g1 PHD_FILE: MSMg01no377_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:51 2005
(438 letters)
>mm_chr9_27740562_27741399
Length = 838
Score = 847 bits (438), Expect = 0.0
Identities = 438/438 (100%)
Strand = Plus / Minus
Query: 1 tttctctcaactatttttagacctcttcattaggccacatgggctccctccctctcctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tttctctcaactatttttagacctcttcattaggccacatgggctccctccctctcctga 579
Query: 61 cttcttcagctttcctgacccactcatttcaaatgtgcagcaggggggaaatgatatctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cttcttcagctttcctgacccactcatttcaaatgtgcagcaggggggaaatgatatctt 519
Query: 121 ctaactcaggctcaaatgaggaactgattgatgcaaatttgttgtaagttcaagttgggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ctaactcaggctcaaatgaggaactgattgatgcaaatttgttgtaagttcaagttgggt 459
Query: 181 atgacttcaattgctacaggtgatccctggggcatctccactaatttgaatcctccacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 atgacttcaattgctacaggtgatccctggggcatctccactaatttgaatcctccacaa 399
Query: 241 gagaccatttatttggccttctccaatcacttacaagtaaagcaaccctttgaaggtgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gagaccatttatttggccttctccaatcacttacaagtaaagcaaccctttgaaggtgac 339
Query: 301 ctttgccccttctgctaaattattggacagtaagaggcatgacaatattttgcattccta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ctttgccccttctgctaaattattggacagtaagaggcatgacaatattttgcattccta 279
Query: 361 tggtgaattatgctcttctaagagcttccacagaaatgatttcatttctctctaaaaaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tggtgaattatgctcttctaagagcttccacagaaatgatttcatttctctctaaaaaca 219
Query: 421 aacctcacagctctgggc 438
||||||||||||||||||
Sbjct: 218 aacctcacagctctgggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space: 355641
Effective search space used: 355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
