NCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGCAGGCTCTGCCTTTGGTCTGGTGAGTTATTGTAAGGGAAAG
ATCCAACTCTGAGTCTCTCTGACGATATTTCTGACTAGCTACAGACTAGG
AACATACTGACTACTTCATATACTTTCTCACTCTTCTCCAAGCCCAAATC
TATGATTTAATTTCTGTGGTGAATTATCAATAGATCCTGAACTTTAATAC
TCAAGAAATTTTTTCGTTTTCATCTTTCTTCTATCAGGCCCTTTACATCT
ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT
CTATCTATCTATCTATGGCATGAATTTATACATATTGTATGTCTTGTTCT
GTTTCTATGGTTTCTAGTGTCAATTATCCTGTCCTTACCATATGGGAGAT
TTATGTTGGCATATCTTTCTCCTCACTTATTTTCCCTCACCTATATTCTT
CCTTGTGATGAAAATATCAAAGATATTTGTTATTGTTTGTTCACAATTGT
CTTTACCCATAGCACATCCTTTGATGCTTAAATTATATACCCACTCCTGC
ATGCTGTTCACTTTTCCTATGTAGGTCTTAATATATTTATCATAGCTACT
TAGATTTCCTGTCATATATAGAGAATATCTGTATTCTAAACAATCCATTA
TTCCCTATAATTTCCCCCTGGAGAAGGGGTTTTCTTTTACCTTTTGGAAT
CCAACTTGG

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCTGGTTTCTTTTCAGATAA
TTTGATATTAACAAAAGAAACAAGAATAACTGAATAACCAGTATCCCCTG
GAGATCGTGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCA
TCAGTGGGAAGAGAGGCCCATTGGTCGTGCAAACTTTATATGCCTCAGTA
CAGGGGAACGCCAGGGACAAGAAGTAATAGTGGGTGGGTAGGGGATTGGG
GNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNN
NTNTNTNNTNNNTTTTNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTN
NTTTNNNTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTNTNTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTT
TTTTTCCTTTCCNTTTTTTTTCTTTTCCCCCTTTCTTTTT

Query= MSMg01no378_f04.b1 MSMg01no378_f04.b1 CHROMAT_FILE:
MSMg01no378_f04.b1 PHD_FILE: MSMg01no378_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:47 2005
         (554 letters)



>mm_chr9_12092368_12093321
          Length = 954

 Score =  963 bits (498), Expect = 0.0
 Identities = 528/550 (96%), Gaps = 20/550 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcaggctctgcctttggtctggtgagttattgtaagggaaagatccaactctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcaggctctgcctttggtctggtgagttattgtaagggaaagatccaactctg 264

                                                                       
Query: 65  agtctctctgacgatatttctgactagctacagactaggaacatactgactacttcatat 124
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 agtctctctgacgatatttctgactagctacagactagaaacatactgactacttcatat 324

                                                                       
Query: 125 actttctcactcttctccaagcccaaatctatgatttaatttctgtggtgaattatcaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actttctcactcttctccaagcccaaatctatgatttaatttctgtggtgaattatcaat 384

                                                                       
Query: 185 agatcctgaactttaatactcaagaaattttttcgttttcatctttcttctatcaggccc 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 agatcctgaactttaatactcaagaaattttttctttttcatctttcttctatcaggccc 444

                                                                       
Query: 245 tttacatctatctatctatctatctatctatctatctatctatctatctatctatctatc 304
           |||||||||||||||||| |                   |||||||||||||||||||||
Sbjct: 445 tttacatctatctatcta-c-------------------ctatctatctatctatctatc 484

                                                                       
Query: 305 tatctatctatctatggcatgaatttatacatattgtatgtcttgttctgtttctatggt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tatctatctatctatggcatgaatttatacatattgtatgtcttgttctgtttctatggt 544

                                                                       
Query: 365 ttctagtgtcaattatcctgtccttaccatatgggagatttatgttggcatatctttctc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ttctagtgtcaattatcctgtccttaccatatgggagatttatgttggcatatctttctc 604

                                                                       
Query: 425 ctcacttattttccctcacctatattcttccttgtgatgaaaatatcaaagatatttgtt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ctcacttattttccctcacctatattcttccttgtgatgaaaatatcaaagatatttgtt 664

                                                                       
Query: 485 attgtttgttcacaattgtctttacccatagcacatcctttgatgcttaaattatatacc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 attgtttgttcacaattgtctttacccatagcacatcctttgatgcttaaattatatacc 724

                     
Query: 545 cactcctgca 554
           ||||||||||
Sbjct: 725 cactcctgca 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)