BAC Information

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BAC

Clone NameMSMg01-378H11
Chromosome9 (Build37)
Map Location 70,470,160 - 70,470,622
singlet/doubletsinglet
Overlap geneB230380D07Rik
Upstream geneFoxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e, Ccnb2, Rnf111, Sltm
Downstream geneAdam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378H11.T7 (MSMg01no378_h11.b1)MSMg01-378H11.TJ (MSMg01no378_h11.g1)
ACCAG483306AG483307
length665767
length of high quality
(start - end)		63 (142 - 204)463 (76 - 538)
definitionCHROMAT_FILE: MSMg01no378_h11.b1 PHD_FILE: MSMg01no378_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:58 2005CHROMAT_FILE: MSMg01no378_h11.g1 PHD_FILE: MSMg01no378_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCTCCTCCCTTCCCCCTTATTATTCCCCCNNCAACCCCTCTATXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTCCCAGAGAGATCCGCGGAATTCA
AGATATTTGCCTCCTAGCTCAACCCCTTGGAATGGGTGGGATTTCAGTCA
TAAGTCACCACACCCAACNAATTTTAGAAATTATGTTCATTTACTTGTGG
CAGAGTGGGCAGAGACATATGTAGAAGTCAGAGAACTTTTGAGAAAGTGG
TCCCTCCTCCTCCCCACCCAAAGTGGGGGTTTTCTGGGGGGGTCCCCCCC
CCTCCGGGGAAAATCTCCGCGCGTTTTTTTTGTGGTAAAAAGTGTTTTTT
TTCTTTTCTCCCCCCCATTATTTTTTTGGCGATCCTTCTCTTTGTGTGGG
GGGGGGCCGTCCCCCTTAAAATAAATAAAAACACTCCTTTTTTTCTCTAA
TTTTTTTTTTTTAAAAAAAAAAAGGTTTTTTTTTTTTTTTTTAAACCCCA
CACCAATTTTTTATTGGGCTCCCCCTCTCCCCGCGGGGGTGGCTTTTTTT
TTTATAAACACCCCCCTCCTTTCTTTNTTTTTTTTATATAAAAACCCCCA
CCACCCCCCCCTCTCTTTTTTTTTTCTTTTTAAAAAGAAGAGAGGGGGGG
AGCCCCCCCCCCCCA

CCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTTCAAAGAGACAATGATGAC
ACACTCATGAGTGAAGTGATGTGACACTTGCAATTAGCTATGATATGCTT
TAGGAAGAAAAAGTGTGTTGTGTAGGAATACAGAATAAAGGCAGGTATTC
AATGTGTGAGCAACTGGTGAATTAGGTAAAGAACATGCAAATGTTCACCA
AGAGGGCCTACCTTTTTATAGTTTTTGAGACTTCTCAAAATAAATTAGAA
CAAAGACAAATGACGGATATTATTTAATAAATTAATAGTTACTGCCTCTA
CTTAATGAATATAATATTAATGCAACTAGGCAAAAAGAAGTTTGAGTAAA
TATCCTGGGGTTAATTTTATAAGCATGTGTTTATTCTAGGAATAGTTGTT
AAGAAGTTACTCCTAAAAGGATGTGAAACTAAATGACTGACTTTGGGAGA
GTCTGACAGTTGGTACTGGGGTGCTGGTGGTGGTGATCCTTATTCATTCT
TATTTTCATGTCACAAGCCATCATGATAGTAACCAGATTCATAAGGCATG
GCCCCTCAAGAGGAACCCTGATGAACCCTGTTTAATGAAACCATGCTGCA
TTGCTATGCTGTGTTGCATAGCTGTGCCGGGCTGCGTTGTTTTAATCTTT
CTCGTCCCCTCCCCTCGTCCAGTTTCATCTGCCATTGATTAGTAGACATT
TTTTTTTTACTATGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_h11.g1 MSMg01no378_h11.g1 CHROMAT_FILE:
MSMg01no378_h11.g1 PHD_FILE: MSMg01no378_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:58 2005
         (463 letters)



>mm_chr9_70469960_70470822
          Length = 863

 Score =  864 bits (447), Expect = 0.0
 Identities = 459/463 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctttcaaagagacaatgatgacacactcatgagtgaagtgatgtgacacttgcaatt 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 tttctttcaaagagacaatgatgacacattcatgagtgaagtgatgtgacacttgcaatt 260

                                                                       
Query: 61  agctatgatatgctttaggaagaaaaagtgtgttgtgtaggaatacagaataaaggcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctatgatatgctttaggaagaaaaagtgtgttgtgtaggaatacagaataaaggcagg 320

                                                                       
Query: 121 tattcaatgtgtgagcaactggtgaattaggtaaagaacatgcaaatgttcaccaagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattcaatgtgtgagcaactggtgaattaggtaaagaacatgcaaatgttcaccaagagg 380

                                                                       
Query: 181 gcctacctttttatagtttttgagacttctcaaaataaattagaacaaagacaaatgacg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 gcctacctttttatagtttttgagacttctcaaaataaattagaacaaagacaaatgatg 440

                                                                       
Query: 241 gatattatttaataaattaatagttactgcctctacttaatgaatataatattaatgcaa 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 gatattatttaataaattaatagttactgcctctacttaatgaagataatattaatgcaa 500

                                                                       
Query: 301 ctaggcaaaaagaagtttgagtaaatatcctggggttaattttataagcatgtgtttatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaggcaaaaagaagtttgagtaaatatcctggggttaattttataagcatgtgtttatt 560

                                                                       
Query: 361 ctaggaatagttgttaagaagttactcctaaaaggatgtgaaactaaatgactgactttg 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaggaatagttgttaagcagttactcctaaaaggatgtgaaactaaatgactgactttg 620

                                                      
Query: 421 ggagagtctgacagttggtactggggtgctggtggtggtgatc 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggagagtctgacagttggtactggggtgctggtggtggtgatc 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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