BAC Information

Click to search

BAC

Clone NameMSMg01-378J22
Chromosome9 (Build37)
Map Location 24,673,476 - 24,673,877
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040878, LOC100040893, Npsr1, Dpy19l1, Cypt4, Tbx20, LOC666251
Downstream geneLOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378J22.T7 (MSMg01no378_j22.b1)MSMg01-378J22.TJ (MSMg01no378_j22.g1)
ACCAG483424AG483425
length795800
length of high quality
(start - end)		455 (49 - 503)402 (86 - 487)
definitionCHROMAT_FILE: MSMg01no378_j22.b1 PHD_FILE: MSMg01no378_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:09 2005CHROMAT_FILE: MSMg01no378_j22.g1 PHD_FILE: MSMg01no378_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCACCTGATGAATACCGAATGGCTGAGAAGCACCTGAAAAAA
TGTTCAACATCCTTAATCATCAGGGAAATGCATATCAAAACAACCCTGAG
ATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACA
GCAGATGCTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGG
TGGGATTGCAAGCTTGTACAAAAATTCCATTTTGCATTAGCCAACAACTC
CTGTACATGGGGCCTGCCCTGGAATGCAGTGTTCTTAACCGGTATCAATC
ATAGATAATTTCATGGTATTCCACCAAACTGGAAAACCTACAAGAAATCG
ATGAATGTTTTAGCAAATATAATCTATGGAAGTTAAATCAAGATGAAATA
AACAATTTAAACTAACTCATAGCTCACAGTAAAATAGAAGCAATAATTAA
AATTCTCCCAAGCAGGGGCAGAAGAGGTCACCCAGTGGTTTAGAGCACTG
GCTGTTTCTCCAGAAAGCCAGGGTTTGATTCCCACACCCACTTGCAGCTT
CAAACTGTTCTAATTCCAGTCCAGGAACCAATGCCCTCTGTTGGCCTCCG
GGGGGCCCAGGCCAAACATGGAAAGGGGAATTACCTGGAAAAAAGAATTT
GTGCCCTACTTCTTACTTATGGGGAAAAACAAACTTAAAAACCCCCCACC
AAAAAACCTAAAATTTTACAAAAAATTAGTGGCAATTCCCCCCCT

NNNCCAATGAAGNTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTTCATAGTATTTTC
AATTCATGATGGATTCATTGGGCTATGACAGCATCCTAAAACTAGAGCAT
CTGTCATTTTACTTTCTAAAACATCAAGCTTCAGTTTATCTCAAGATTTT
AAGTGTCTTTGCCCTTTCTGTAAGTATGGCCTCTTCTCATTGCCATGTAT
AAATAGTTGTCCATTTCTTGTTGAAAGCTGTTGACTTGGGTTGTATGCAA
CTCAAAACTAAAGGCATTTTAACTCACAGAGGCAAATAAATAGGAAGATG
TAGCATGTGCTCTTATGGCAGACACAAACTCATGCTCCTGTACCAGTCTC
TCCTTCATTCTTCACCTATAGTTCTTTAAGAGTTGACTAAGCTGTCTCTT
CCTCGAAGAAGCATTCTCTGACCAATCCAGTCCCAATGAACCTGGATGTT
TTCCCAGTACTCCTTAAAATCTTCATAGAAATATTTTAAATTCAAACAGA
TTGGATTCAGGGCAGTGACCTGTCCTGAATAATCTCCAACCCCCGAAGGA
AGGGTTTTGTAACCAAAAAGGTACCGCAACTATTTTCTCACCGAATGGCC
TTGTGGGGGTTCAAAAAAAAGAACTTTGAAACAACATTCCCAAAAGGGGG
TCCCGGAAACAAAAATATTTGGTCTCCAAATGGGAAAAATTTTATCACAT
CCCTCCCCCGGTCCCCCTTGTTATTTCCCTGAACCGGCCTTAATGGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_j22.g1 MSMg01no378_j22.g1 CHROMAT_FILE:
MSMg01no378_j22.g1 PHD_FILE: MSMg01no378_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:09 2005
         (402 letters)



>mm_chr9_24673298_24674099
          Length = 802

 Score =  777 bits (402), Expect = 0.0
 Identities = 402/402 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttcatagtattttcaattcatgatggattcattgggctatgacagcatcctaaaactag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gttcatagtattttcaattcatgatggattcattgggctatgacagcatcctaaaactag 521

                                                                       
Query: 61  agcatctgtcattttactttctaaaacatcaagcttcagtttatctcaagattttaagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 agcatctgtcattttactttctaaaacatcaagcttcagtttatctcaagattttaagtg 461

                                                                       
Query: 121 tctttgccctttctgtaagtatggcctcttctcattgccatgtataaatagttgtccatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tctttgccctttctgtaagtatggcctcttctcattgccatgtataaatagttgtccatt 401

                                                                       
Query: 181 tcttgttgaaagctgttgacttgggttgtatgcaactcaaaactaaaggcattttaactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tcttgttgaaagctgttgacttgggttgtatgcaactcaaaactaaaggcattttaactc 341

                                                                       
Query: 241 acagaggcaaataaataggaagatgtagcatgtgctcttatggcagacacaaactcatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 acagaggcaaataaataggaagatgtagcatgtgctcttatggcagacacaaactcatgc 281

                                                                       
Query: 301 tcctgtaccagtctctccttcattcttcacctatagttctttaagagttgactaagctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tcctgtaccagtctctccttcattcttcacctatagttctttaagagttgactaagctgt 221

                                                     
Query: 361 ctcttcctcgaagaagcattctctgaccaatccagtcccaat 402
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ctcttcctcgaagaagcattctctgaccaatccagtcccaat 179


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |