Query= MSMg01no379_e16.b1 MSMg01no379_e16.b1 CHROMAT_FILE:
MSMg01no379_e16.b1 PHD_FILE: MSMg01no379_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:01 2005
(574 letters)
>mm_chr9_114919971_114920944
Length = 974
Score = 1002 bits (518), Expect = 0.0
Identities = 558/578 (96%), Gaps = 13/578 (2%)
Strand = Plus / Plus
Query: 5 gaattcttacttctttc----tggcaggaaggagttaaatattttctcgttagctagagg 60
||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gaattctta----tttccatgtggcaggaaggagttaaatattttctcgttagctagagg 255
Query: 61 tatttcctgctgaaaaatgtcaaatggttactttcaacctggacttttgtgtgtatggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tatttcctgctgaaaaatgtcaaatggttactttcaacctggacttttgtgtgtatggtt 315
Query: 121 tgaggttgggacctgactcctttttataatttctgtactgtgtatgtttccatgacagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tgaggttgggacctgactcctttttataatttctgtactgtgtatgtttccatgacagtg 375
Query: 181 gggaataatgtctgtttgt-----ctcacactgttcaggacacacagaagggtttctgcc 235
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 376 gggaataatgtctatttgtggtgtctcacactgttcaggacacacagaagggtttctgcc 435
Query: 236 aaggtcatattgctttattattgttattattgtttgtgattatgatcatcatcattatta 295
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 436 aaggtcatattgctttattattgttattattgtttatgattatgatcatcatcattatta 495
Query: 296 agtcttccatttattccattgattagtctcttcatggtgtgtttgctgtgtgcattagga 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 agtcttccatttattccattgattagtctcttcatggtgtgtttgctgtgtgcattagga 555
Query: 356 aagacaattgactactgacattgaccaagagatcaggctggagagaccaagtgtgatggc 415
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 556 aagacaattgactactgacattgatcaagagatcaggctggagaggccaagtgtgatggc 615
Query: 416 ctgtaacctctgtaacccagcacttgggaagctgaggcaggaggatcagatcaaggccag 475
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 616 ctgtaacctctgtaacccagcacttgggaagctgaggcaggaagatcagatcaaggccag 675
Query: 476 cctggcttaaagagatcatgttagaaacaaacagacagacagacagacagacagacaaag 535
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 676 tctggcttaaagagatcatgttagaaacaaacagacagacagacagacagtcagacaaag 735
Query: 536 ggaaaattaacctagaaattgcatccctctttcattta 573
||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ggaaaattaacctagaaattgcatccctctttcattta 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_e16.g1 MSMg01no379_e16.g1 CHROMAT_FILE:
MSMg01no379_e16.g1 PHD_FILE: MSMg01no379_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:01 2005
(407 letters)
>mm_chr9_115096737_115097543
Length = 807
Score = 576 bits (298), Expect = e-169
Identities = 301/302 (99%), Gaps = 1/302 (0%)
Strand = Plus / Minus
Query: 1 cttttccttcgggtagctgacttctgcatcttatccatatcagtgaggaggcttttagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cttttccttcgggtagctgacttctgcatcttatccatatcagtgaggaggcttttagtt 242
Query: 61 aggactgtgagagccaataaagaggaaggaatgacgaagtcggggctggggagagatggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aggactgtgagagccaataaagaggaaggaatgacgaagtcggggctggggagagatggc 182
Query: 121 ttagttggtaaagtgttaattctgcaacctgaggactgagtttaagtcccagtacccaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttagttggtaaagtgttaattctgcaacctgaggactgagtttaagtcccagtacccaag 122
Query: 181 tcaaaaaaaaaaaaaaaaaaagtcagtcattgtggtgtggtcttgtaatcctagactggg 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tc-aaaaaaaaaaaaaaaaaagtcagtcattgtggtgtggtcttgtaatcctagactggg 63
Query: 241 aagacagagataggtggacgtctggggctccctggctggccagcctcggctactaggtga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 aagacagagataggtggacgtctggggctccctggctggccagcctcggctactaggtga 3
Query: 301 ga 302
||
Sbjct: 2 ga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space: 317604
Effective search space used: 317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
