BAC Information

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BAC

Clone NameMSMg01-380B05
Chromosome9 (Build37)
Map Location 106,344,564 - 106,344,918
singlet/doubletsinglet
Overlap geneAbhd14a
Upstream geneAtp2c1, EG434434, LOC664981, Pik3r4, E330026B02Rik, EG665033, 1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1
Downstream geneAbhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380B05.T7 (MSMg01no380_b05.b1)MSMg01-380B05.TJ (MSMg01no380_b05.g1)
ACCAG484537AG484538
length771775
length of high quality
(start - end)
459 (36 - 494)402 (66 - 467)
definitionCHROMAT_FILE: MSMg01no380_b05.b1 PHD_FILE: MSMg01no380_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:02 2005CHROMAT_FILE: MSMg01no380_b05.g1 PHD_FILE: MSMg01no380_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGCA
CAATTCTACATGCAGGGATACACGTATAAATTAAAAATAAAATCAATATA
TACTTTTTAAAGTGAAGTCCTTAGAAACCAATGCCACTTCTCTGTTTCCT
CTGTAAACAGCTGAGAGTGACAGCCCCACTTTCAAGTATTTCCATGTTTA
GAGATAACAGACAGGTGGACCTGATAGTACAGACCTGTAATCCCAGCTAC
TCAGGAGGCTGAAGCTGGAGAATCCCAGATTTAAGGCCTGGGGCAGACAG
AGAGGAAGTTAGAGACAGGACAAACAGACACAGACAAACAACATGCAGGT
TGTATATAGGGGCTGGGAGCGTTAACATCCTGCAAGCTTAATGAATATAT
TTACACCTTAATTTCCTCGGCTACACCATGACTTGTAGGCCAAGCCTGGT
CCTCCAGACCTCCTCCTCTGTTGTTAATGCTGCAGTGTGAGCCATGGGAG
GAATGGGCAGGCTTTGAATGCACATTCCTCAATTAGTAGATTGTCATTTT
CACTTGAAATGCTCAAACATGTAACCCAAACCTCCTCTTAACTATAGAAG
AGCTGGTCCTAATGGCACATACCGCCTGCATTCCGGAAGCCGAGGTTTGT
GTTTTTTGAATTTGAGGCCCGTTTAATCTATAAAATGAACTTTCGGATCA
CTTATTAATACCCCCTAACACCCTTGCTCATTTGCGGGTAGATTCGTCAA
ATTATTCACCACTTTTCTCTN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAGGCTAGCATGAGTTCCACAGAGAGATCCTCTCC
CCGTGCAAAATCAAGGCCCAAGCCAGGTGTGGTGGCACATGCCTATAAAC
CCAGCATTGGGGAGGCTGAGGCAGGTAGATCTCTGAGTTCGAGGCCAAAG
TGATCTGCAGAGTGAGTTCCAGGACAGCCAGGGCTCCACAGAGAAACCAT
ATCTCAGAAAACTAAAAACTGGGGGCGGTGAGGGGGGGGGGTGAAAACCA
AAAACTCACTATTAACCCAAGGGCTGCTGGCAAGACAGCTCAGCAGGCAA
AGGTCCCATCTCCCAATGATGCAAGTCTGATGATCTACGTTTGATTCCAG
GAATTCATGTAATAGCAGAAAGAACACATTCCAAAGAGCTGTCCTCTGAC
CTCCACAGGAACATCGTGGCAAAGCACTACATTATAAAAGGGCCAGGGAT
GTATCTCATAGGTAGCGAGCCTTGCTTAACACCAGCCAGGTTTAAATTCT
CTCCCCTGAAGCCCTAACTTAGTGGTTAACAGCCTTGGCTTGCCCTTCCA
TAAAACCCTTGTTCCCCTGCTTCCCGCCCTTCCAAAGGTCATGGCCCACC
GGTGGCTCTCTCTACTTGCCGACCATGCTATAACCCCCCTCACCCTTAAA
TTAAATAATTTTAAACTTATGACCCTTCTGGAACCCGTTTGGGTTTTTTT
TTTCCTAATCCTTGTACTCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_b05.b1 MSMg01no380_b05.b1 CHROMAT_FILE:
MSMg01no380_b05.b1 PHD_FILE: MSMg01no380_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:02 2005
         (459 letters)



>mm_chr9_106344060_106344918
          Length = 859

 Score =  687 bits (355), Expect = 0.0
 Identities = 355/355 (100%)
 Strand = Plus / Minus

                                                                       
Query: 105 ctctgtttcctctgtaaacagctgagagtgacagccccactttcaagtatttccatgttt 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 ctctgtttcctctgtaaacagctgagagtgacagccccactttcaagtatttccatgttt 800

                                                                       
Query: 165 agagataacagacaggtggacctgatagtacagacctgtaatcccagctactcaggaggc 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 agagataacagacaggtggacctgatagtacagacctgtaatcccagctactcaggaggc 740

                                                                       
Query: 225 tgaagctggagaatcccagatttaaggcctggggcagacagagaggaagttagagacagg 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tgaagctggagaatcccagatttaaggcctggggcagacagagaggaagttagagacagg 680

                                                                       
Query: 285 acaaacagacacagacaaacaacatgcaggttgtatataggggctgggagcgttaacatc 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 acaaacagacacagacaaacaacatgcaggttgtatataggggctgggagcgttaacatc 620

                                                                       
Query: 345 ctgcaagcttaatgaatatatttacaccttaatttcctcggctacaccatgacttgtagg 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctgcaagcttaatgaatatatttacaccttaatttcctcggctacaccatgacttgtagg 560

                                                                  
Query: 405 ccaagcctggtcctccagacctcctcctctgttgttaatgctgcagtgtgagcca 459
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ccaagcctggtcctccagacctcctcctctgttgttaatgctgcagtgtgagcca 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)