BAC Information

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BAC

Clone NameMSMg01-380E10
Chromosome9 (Build37)
Map Location 65,246,306 - 65,246,819
singlet/doubletsinglet
Overlap geneRasl12
Upstream geneMegf11, Rab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik
Downstream geneOstb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380E10.T7 (MSMg01no380_e10.b1)MSMg01-380E10.TJ (MSMg01no380_e10.g1)
ACCAG484691AG484692
length817755
length of high quality
(start - end)
276 (36 - 311)511 (66 - 576)
definitionCHROMAT_FILE: MSMg01no380_e10.b1 PHD_FILE: MSMg01no380_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:18 2005CHROMAT_FILE: MSMg01no380_e10.g1 PHD_FILE: MSMg01no380_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCCCGAGAGGATCCGCGGAATTCCA
GGTTTGCCAGAGTCACATGGTGAGTCCCAGTATAAACACAGTTTCAGAGA
GACAGACAGACAGACAGACAGACAGACAGACAGAGACACACAGACAGAGA
CAAAGGGAAAGAGAGAGGGGTGGAAAGAGAGAGACAGGTGAAGGGAGGGA
GAGGGTGTGAATTATAAAACATAACCAACAAAGGACTTCGATGTATAATA
TAGTTTTTTTTTGGCAGTTTTTCTTTTCTTTTCTTTTTTTTTACTCGTTA
TTATATATATCTTTTTTTTAACTCTGAGGAGCCAGTTCTTCTCACGATTT
TGTGGCTTCTTGGCATTGAACTCAGACAATCAGGTGTGTGCAGGCTTTTC
CTATTTGCACCATTTTGTTCGCCCTATAATATAAGTTTTTAGAATTAGTC
TTGTGTGTACCTTTTGTATTCACAGGATTTCCATCAGTTTGTATCTCTCT
TTTTCCACCCCGTCTTTTGTTGTTTTCCTCCTACTTCTCTCTTTTTTCTT
CCCACATGTACATTTTTTTTTTGACCTTTTTTTCTTGGCTTTTACTCTCC
TTCTTCTTATTCTCTCTTTTTCCTCTATTCCTTTTTTTTCTTTTTTTCTT
CTATTTTTTTTATCCCTTCTATTTTTTTATTCCTCCTTCTTTTTTCCTCC
GCTTTTCCCCCTCTTTTTTTTTTTCCTTCCCCTCTTTTTTCATCTTTTTC
TTGTTTTTCCTTCTTTACTTCCTTCCTCTTTTTCTTCTTTTTTGCTCCAT
TTTCCCTTTTCTCCTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAAGGGGACCCAGGACTGGAGACCAGCGCCAACAG
GTCTCGTTAGTGTCAGCTGATGAGATTTGGCTGCTGGTCCTAGGGATGCA
GAGAAACTAATAGAAACACAAAGAGAAAATTTGGGGGGGGGGGGACAGGA
GTCACAGGCACCGAGAACAGAGGTAGAGGCAGGCAAGCAGCTAATGATAA
CCAAAGCGATGGAGAAGCAAGGCGAGAGTGATAGCCTGCAACAGAGAAAC
TGAGGCAAATTTTAAGTCTTAGGGACTCACCCAACCACCGGGAGAAGCAA
GTCCCTGAGAGCTGGTGGATGAAGCTGCCCTCATCCTCCGCTCTCCAAGC
TACTCACCAGACTTGCCCGCTCCGCGGCGCCCAAGGATAGCCAGGTTAAC
TTCCAGGGGCACGCTGTGCGGCCCGCTGCCAGCTCGGGGCTTGCCGAACA
CCGACGACATGGCGAATCTGCAGATGGCCACGCCGGTCTCCCGGCCCGAT
GGGCTGCTAGTTGCACGCCCCCAGTCACTCAGACTATCGGCGTCCGCCCG
CTGTATGAGGGGCGCGGACGGCCCGTGTCCTCCATGTTCCCACTGGCCTT
TAAAACCGTCCATTCTCCCCGCTTAGTATCCGGGTCCCGGGTTTGCTTTC
CTTGCCCCCTGGGGCTCTCTTCGTGTCTTTTCCCCTACACAACTCCCGAT
TCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_e10.g1 MSMg01no380_e10.g1 CHROMAT_FILE:
MSMg01no380_e10.g1 PHD_FILE: MSMg01no380_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:18 2005
         (511 letters)



>mm_chr9_65246022_65246927
          Length = 906

 Score =  870 bits (450), Expect = 0.0
 Identities = 497/522 (95%), Gaps = 19/522 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaggggacccaggactggagaccagcgccaacaggtctcgttagtgtcagctgatgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 aaaggggacccaggactggagaccagcgccaacaggtctcgttagtgtcagctgatgaga 739

                                                                       
Query: 61  tttggctgctggtcctagggatgcag------aga--aactaatagaaacacaaagagaa 112
           ||||||||||||||||||||||||||      |||  |||||| ||||||||||||||| 
Sbjct: 738 tttggctgctggtcctagggatgcagataagtagaggaactaagagaaacacaaagagag 679

                                                                       
Query: 113 aatttggggggggggggacaggagtcacaggcaccgagaacagaggtagaggcaggcaag 172
           |||||    ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 678 aattt----ggggggggacaggagtcacaggcaccgagaacagaggcagaggcaggcaag 623

                                                                       
Query: 173 cagctaatgataaccaaagcgatggagaagcaaggcgagagtgatagcctgcaacagaga 232
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cagctaaagataaccaaagcgatggagaagcaaggcgagagtgatagcctgcaacagaga 563

                                                                       
Query: 233 aactgaggcaaatttta---agtcttagggactcacccaaccaccgggagaagcaagtcc 289
           ||||||||||||    |   ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 562 aactgaggcaaa----aagcagtcttagggactcacccaaccaccgggagaagcaagccc 507

                                                                       
Query: 290 ctgagagctggtggatgaagctgccctcatcctccgctctccaagctactcaccagactt 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ctgagagctggtggatgaagctgccctcatcctccgctctccaagctactcaccagactt 447

                                                                       
Query: 350 gcccgctccgcggcgcccaaggatagccaggttaacttccaggggcacgctgtgcggccc 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gcccgctccgcggcgcccaaggatagccaggttaacttccaggggcacgctgtgcggccc 387

                                                                       
Query: 410 gctgccagctcggggcttgccgaacaccgacgacatggcgaatctgcagatggccacgcc 469
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 386 gctgccagctcggggcttgccgaacaccgacgacatggcgaagctgcagatggccacgcc 327

                                                     
Query: 470 ggtctcccggcccgatgggctgctagttgcacgcccccagtc 511
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggtctcccggcccgatgggctgctagttgcacgcccccagtc 285


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 906
Length adjustment: 10
Effective length of query: 501
Effective length of database: 896
Effective search space:   448896
Effective search space used:   448896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)