BAC Information

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BAC

Clone NameMSMg01-381H20
Chromosome9 (Build37)
Map Location 26,172,982 - 26,297,729
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666327, 2310005P05Rik
Downstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b, Spata19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381H20.T7 (MSMg01no381_h20.b1)MSMg01-381H20.TJ (MSMg01no381_h20.g1)
ACCAG485618AG485619
length717788
length of high quality
(start - end)		391 (28 - 418)437 (67 - 503)
definitionCHROMAT_FILE: MSMg01no381_h20.b1 PHD_FILE: MSMg01no381_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:55 2005CHROMAT_FILE: MSMg01no381_h20.g1 PHD_FILE: MSMg01no381_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,297,351 - 26,297,729)(26,172,982 - 26,173,418)
sequence
GGGGGCGCTATACGACTCACTATTTCGAGAGGATCCGCGGAATTCTACTG
TTTGCCAACAAGCCAGCGTTTTTTTCTTCCTAAGTCTCAGAACCCAAATA
ACCTTCTGGAATAGAGCTCCAAAGAAGGAATTAGGCACAATTTCCTAAAG
ATTCATCTACACAGTTGTACTGGTAGCTTTCACCCTTCCCTTGTCCTAGA
GGTGTGTCCTATGGCTCAGGTTAACTTTCAACTCTTAGTCCTCTGCTTCT
AGTATATAACAATATGCTGGGTCTCCTCCACATCCCACAATGTTTGAGAT
GGTATACAGGTCTTCTTGCATACAAAGCAAATGATGTAATATGTCACAGG
CCAGCCTGTTCTTTTAAATCTCTAGGCATTTTCTCGTTGTATAGATGTGC
CTACCATTAACTTACTGANAATGTTANGCTGATGGAAGCTTCATTTTGGT
TATTTATACATGGATTATTTTATGAAATTCCTTATTAAAATTTATTTATA
TTTGGTAAAATTTTGGGCATCCAAGAGAACACACTTTTTAGAACCCCGGC
AAAAAAAAAAAAAATCCCGTTGGATATTTTCGCCCTTGCAAAAAATTAAA
CCCCTTTTATTGAATTCCTGCCCCGTTCTTTTTTTAGGGAACGGGGTTTA
CCCTTTTTTTCCTCCCTTCCACGGGCGTGGGCCCTTTTATATCCCAAAAA
ATCCTCCTCCGCTGTTN

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATTAGTGTTGCTTAGAAGAAATTAAAATGAATGT
TCAAGAGATTCCTTTAGTCTTGCAAGAATTTGAAGACAGTGTAAACATCA
ATGGGAAGATTACATTAGTGAGTGAACATGTTGAATACATTTACATTTTA
TGAATGGAAAGTGTTTCTTGAAATTACCACCAGATTGGAAATACTAAGGG
AGATAAGTCACAGCCCTCCCACTGCAAATGCAGAGGAACTTATCAGGGGC
AGAGGGGCTGTCCTAATTGTCTTGGAGGCCATTTCATTTCTACTTCTATG
GCCACATAGTACTCGGCTGCTATGTATGCTTCTGACCGGTGTAGGCTAAT
TGGGTAGGCTGGTAAAATGCCAAGTCTGTCAGCTAGTAAAAATGGAAAGA
CCTTTGTGTTCAAGCTTGGTTTTAAGAGCTACCTGCATAGAAATAAAATG
TATGGTTCCAGAATTGTAAATAATAGAAGCCTATGCTATTGGGTAGTATT
TCTTTATCCTGGGGGGAAAAAAAGCTGAACCATAGAGTTCCTGACACACC
TCTGTACACGCTTGCCTTGGCTCCCTTTAATTGTGGCACGGGGGCCTTCT
TGTACCCCCCCCCTTAAACACCCTTTGGTAACCCTTCCTTTTTCCCCCCT
CTTTTTTAATTTATATAAATCACCCCTGGCTTGGGGTCTCCCCCTTACCT
CAGCGTGTTCGGCCCTAATTTTCTCTTTTTAAACCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_h20.b1 MSMg01no381_h20.b1 CHROMAT_FILE:
MSMg01no381_h20.b1 PHD_FILE: MSMg01no381_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:55 2005
         (391 letters)



>mm_chr9_26297139_26297929
          Length = 791

 Score =  710 bits (367), Expect = 0.0
 Identities = 376/379 (99%)
 Strand = Plus / Minus

                                                                       
Query: 13  gaattctactgtttgccaacaagccagcgtttttttcttcctaagtctcagaacccaaat 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 591 gaattctactgtttgccaacaagccagcgtttttttcttcctaagtctcagaatccaaat 532

                                                                       
Query: 73  aaccttctggaatagagctccaaagaaggaattaggcacaatttcctaaagattcatcta 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aaccttctggaatagagctccaaagaaggaattaggcacaatttcctaaagattcatcta 472

                                                                       
Query: 133 cacagttgtactggtagctttcacccttcccttgtcctagaggtgtgtcctatggctcag 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 cacagttgtactggtagctttcacccttcccttgtcctagaggtgtgtcctatggctcag 412

                                                                       
Query: 193 gttaactttcaactcttagtcctctgcttctagtatataacaatatgctgggtctcctcc 252
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gttaactttcaacccttagtcctctgcttctagtatataacaatatgctgggtctcctcc 352

                                                                       
Query: 253 acatcccacaatgtttgagatggtatacaggtcttcttgcatacaaagcaaatgatgtaa 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 acatcccacaatgtttgagatggtatacaggtcttcttgcatacaaagcaaatgatgtaa 292

                                                                       
Query: 313 tatgtcacaggccagcctgttcttttaaatctctaggcattttctcgttgtatagatgtg 372
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 291 tatgtcacaggccagcctgttcttttaaatctctaggcattttctcattgtatagatgtg 232

                              
Query: 373 cctaccattaacttactga 391
           |||||||||||||||||||
Sbjct: 231 cctaccattaacttactga 213


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no381_h20.g1 MSMg01no381_h20.g1 CHROMAT_FILE:
MSMg01no381_h20.g1 PHD_FILE: MSMg01no381_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:55 2005
         (437 letters)



>mm_chr9_26172782_26173618
          Length = 837

 Score =  814 bits (421), Expect = 0.0
 Identities = 433/437 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attagtgttgcttagaagaaattaaaatgaatgttcaagagattcctttagtcttgcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attagtgttgcttagaagaaattaaaatgaatgttcaagagattcctttagtcttgcaag 260

                                                                       
Query: 61  aatttgaagacagtgtaaacatcaatgggaagattacattagtgagtgaacatgttgaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttgaagacagtgtaaacatcaatgggaagattacattagtgagtgaacatgttgaat 320

                                                                       
Query: 121 acatttacattttatgaatggaaagtgtttcttgaaattaccaccagattggaaatacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatttacattttatgaatggaaagtgtttcttgaaattaccaccagattggaaatacta 380

                                                                       
Query: 181 agggagataagtcacagccctcccactgcaaatgcagaggaacttatcaggggcagaggg 240
           || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 agagagataagtcacagccctcccactgcaaatgcggaggaacttatcaggggcagaggg 440

                                                                       
Query: 241 gctgtcctaattgtcttggaggccatttcatttctacttctatggccacatagtactcgg 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgtcctaattgtcttggaggccatttcatttctacttctatggccacatagtactcgg 500

                                                                       
Query: 301 ctgctatgtatgcttctgaccggtgtaggctaattgggtaggctggtaaaatgccaagtc 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgctatgtatgcttctgactggtgtaggctaattgggtaggctggtaaaatgccaagtc 560

                                                                       
Query: 361 tgtcagctagtaaaaatggaaagacctttgtgttcaagcttggttttaagagctacctgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtcagctagtaaaaatggaaagacctttgtgttcaagcttggttttaagagctacctgc 620

                            
Query: 421 atagaaataaaatgtat 437
           |||||||||||||||||
Sbjct: 621 atagaaataaaatgtat 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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