BAC Information

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BAC

Clone NameMSMg01-381M02
Chromosome9 (Build37)
Map Location 120,612,371 - 120,785,990
singlet/doubletdoublet
Overlap geneLOC100040010
Upstream geneScn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik
Downstream geneCtnnb1, Ulk4, Trak1, Cck, Lyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381M02.T7 (MSMg01no381_m02.b1)MSMg01-381M02.TJ (MSMg01no381_m02.g1)
ACCAG485821AG485822
length709733
length of high quality
(start - end)		552 (60 - 611)537 (76 - 612)
definitionCHROMAT_FILE: MSMg01no381_m02.b1 PHD_FILE: MSMg01no381_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:16 2005CHROMAT_FILE: MSMg01no381_m02.g1 PHD_FILE: MSMg01no381_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,612,371 - 120,612,922)(120,785,462 - 120,785,990)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGAG
ATCCACTAAGAATTTAGGTTTTTGAGTATGTTTCTAGAACATTCATGTGC
GTGGACACACAGGAGCACGGGTATTGTCCGCACAATCAACATCCAGTTTA
GAGAGATGGTCTCATATCTAAGGTCAGACACCCATGTTCCCTGTCACCCA
ATGCCTGGAGCTGCACAAGGGATGTGAGAACCGAGCCAGCTGATCCCTCT
GAAAGCCATGGGCAGGTCTCCGGTTGTCTGAGCACAGACTCTCTGAGGCA
TAATGAGCTTCTAGCCACAATGAAAAGCCAAGTAGAAGAGAGTCTGGTAG
TTAAATGAGGCCAAAGTGACTGGTGTGTGGCGGGACAGCTGGCCTCACGA
AGAGACTCCCATTTCATCCTTAATTTGCATATGGTAAAGACTGATTCTCT
CCCATTAATTCAAATGTATGACACATAGGTGACATTTAAGGCGCAATGGA
GCATTTAATAGACAAACATTTTTCTCGATTAGTATTCACTTGACCTGGTG
ACCCAAAGATGAAGCCTTGCTCTCATTTCCTTCCTATCTGTGGAAGGCTG
CCAAACCAGCAGCAGAAAATTAGCCAGATTGTGCCAGAGCCCAGCCCTTT
GGATGGCCAGGTTTTATAGGCGTGACCATAGTACAATGAGTTAGGCTTTC
GCTTCTTTT

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGACTCCGGAGCATCAGTGGTAGCT
GGACTCACCCTCGAAGCGGCTCTGTAGCACAAATGGGCTTCTTTGTGCAA
GCCAGCCTTGCACAGCTCATTAACAATGGGGCATTAGTAATTACACACCA
AGGAGGGCTTCGCTCAATGGTGCTTTAAAGTTTTCAGCACTTTATTTCAG
GGTGCACCATTAAATTGATTGACCCATTAAAATCAGTACTTAAAAAATAT
TTCATTGTTCAAAAGGAAAAATATAATGATGGTGATACTGACAGTGACAG
AAGCGAGGGGCCGTCTCAAGAGGGATCATTTTGTAAGGGGCCATCCCGCA
CACGGTCAAAAGAATCAGACCATTAACACGTGGGATGTAAAACTCGAAAG
GGAATTTTCCTACTATTAGGTCCAACATTGGTAATTTACGTTAAACAAAA
CAGTGTCATTAATCACGCTAATGACATATTGGTCTGAATCTCATTAGTTT
TAGAGTTTTGCTTGGGTTTAATTTGCAAATTAATTTTTATAGTTTTTTAA
ACAGATTTTTTTGCGAAACATGCGAATTTTATAGCTATTTTTATGCCTTC
TATATTTTAAATAACTTTATAATAAAAACAGCTTCCACAAATAGCGACTC
TGAAGTCCAATCTACCGGAAGCATTGAGAGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_m02.b1 MSMg01no381_m02.b1 CHROMAT_FILE:
MSMg01no381_m02.b1 PHD_FILE: MSMg01no381_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:16 2005
         (552 letters)



>mm_chr9_120612171_120613122
          Length = 952

 Score =  990 bits (512), Expect = 0.0
 Identities = 542/552 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaatttaggtttttgagtatgtttctagaacattcatgtgcgtggacacacaggagcacg 60
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 201 gaatttaggtttttgagtatgtttctagaacattcatgtgcatggacacacaggagcatg 260

                                                                       
Query: 61  ggtattgtccgcacaatcaacatccagtttagagagatggtctcatatctaaggtcagac 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtattgcccgcacaatcaacatccagtttagagagatggtctcatatctaaggtcagac 320

                                                                       
Query: 121 acccatgttccctgtcacccaatgcctggagctgcacaagggatgtgagaaccgagccag 180
           | ||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 321 atccatgttccctgtcagccactgcctggatctgcacaagggatgtgagaaccgagccag 380

                                                                       
Query: 181 ctgatccctctgaaagccatgggcaggtctccggttgtctgagcacagactctctgaggc 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 ctgatccctctgaaagccatgggcaggtctccggttgtctgaacacagactctctgaggc 440

                                                                       
Query: 241 ataatgagcttctagccacaatgaaaagccaagtagaagagagtctggtagttaaatgag 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataatgagcttcaagccacaatgaaaagccaagtagaagagagtctggtagttaaatgag 500

                                                                       
Query: 301 gccaaagtgactggtgtgtggcgggacagctggcctcacgaagagactcccatttcatcc 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcaaagtgactggtgtgtggcgggacagctggcctcacgaagagactcccatttcatcc 560

                                                                       
Query: 361 ttaatttgcatatggtaaagactgattctctcccattaattcaaatgtatgacacatagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaatttgcatatggtaaagactgattctctcccattaattcaaatgtatgacacatagg 620

                                                                       
Query: 421 tgacatttaaggcgcaatggagcatttaatagacaaacatttttctcgattagtattcac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgacatttaaggcgcaatggagcatttaatagacaaacatttttctcgattagtattcac 680

                                                                       
Query: 481 ttgacctggtgacccaaagatgaagccttgctctcatttccttcctatctgtggaaggct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgacctggtgacccaaagatgaagccttgctctcatttccttcctatctgtggaaggct 740

                       
Query: 541 gccaaaccagca 552
           ||||||||||||
Sbjct: 741 gccaaaccagca 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no381_m02.g1 MSMg01no381_m02.g1 CHROMAT_FILE:
MSMg01no381_m02.g1 PHD_FILE: MSMg01no381_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:16 2005
         (537 letters)



>mm_chr9_120785254_120786190
          Length = 937

 Score =  969 bits (501), Expect = 0.0
 Identities = 522/529 (98%)
 Strand = Plus / Minus

                                                                       
Query: 9   gagcatcagtggtagctggactcaccctcgaagcggctctgtagcacaaatgggcttctt 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gagcatcagtggtagctggactcaccctcgaagcggctctgtagcacaaatgggcttctt 678

                                                                       
Query: 69  tgtgcaagccagccttgcacagctcattaacaatggggcattagtaattacacaccaagg 128
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tgtgcaaaccagccttgcacagctcattaacaatggggcattagtaattacacaccaagg 618

                                                                       
Query: 129 agggcttcgctcaatggtgctttaaagttttcagcactttatttcagggtgcaccattaa 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 agggcttcgctcaatggtgctttaaagttttcagcactttatttcagggtgcaccattaa 558

                                                                       
Query: 189 attgattgacccattaaaatcagtacttaaaaaatatttcattgttcaaaaggaaaaata 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 attgattgacccattaaaatcagtacttaaaaaatatttcattgttcaaaaggaaaaata 498

                                                                       
Query: 249 taatgatggtgatactgacagtgacagaagcgaggggccgtctcaagagggatcattttg 308
           || ||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||
Sbjct: 497 tagtgatggtgatactgacagtgacagaagcgagggaccgtctcaagagggatcgtcttg 438

                                                                       
Query: 309 taaggggccatcccgcacacggtcaaaagaatcagaccattaacacgtgggatgtaaaac 368
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgaggggccatcccgcacacggtcaaaagaatcagaccattaacacgtgggatgtaaaac 378

                                                                       
Query: 369 tcgaaagggaattttcctactattaggtccaacattggtaatttacgttaaacaaaacag 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tcgaaagggaattttcctactattaggtccaacattggtaatttacgttaaacaaaacag 318

                                                                       
Query: 429 tgtcattaatcacgctaatgacatattggtctgaatctcattagttttagagttttgctt 488
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tgtcattaatcatgctaatgacatattggtctgaatctcattagttttagagttttgctt 258

                                                            
Query: 489 gggtttaatttgcaaattaatttttatagttttttaaacagattttttt 537
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gggtttaatttgcaaattaatttttatagttttttaaacagattttttt 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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