BAC Information

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BAC

Clone NameMSMg01-382C01
Chromosome9 (Build37)
Map Location 26,107,763 - 26,108,114
singlet/doubletsinglet
Overlap genenone
Upstream geneSept7, EG666327, 2310005P05Rik
Downstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382C01.T7 (MSMg01no382_c01.b1)MSMg01-382C01.TJ (MSMg01no382_c01.g1)
ACCAG486105AG486106
length746759
length of high quality
(start - end)
352 (171 - 522)257 (56 - 312)
definitionCHROMAT_FILE: MSMg01no382_c01.b1 PHD_FILE: MSMg01no382_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:46 2005CHROMAT_FILE: MSMg01no382_c01.g1 PHD_FILE: MSMg01no382_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCGCTATACGACTCACTATATTTCACAAATCCGCGGAATTCTCCTTGAA
TTGCCAAAAACAGGGTAATGAAATGTTGTCTGTCCAGGGTTATTTTCCCT
CAGAAGATGTGGGATCAATATTGGAATATTTACAGCAAGATTCCACAAGC
TTGCTATAAAATATAATAGAGTTTTCTCCCTTTCCTTGGTTGACAGCTTT
CATTTTTTCATAATTGACTAACTTTATTCTTTCTCTTTTTGTTCCTTATT
AGATTATGTTTATCATCCCTTCAGCATTATAATCCACATTGAGTGATAAA
AACGGGATTGTTTGTTGTCTTGGATGGATGTTGCCTCTATTTCTCATCTT
CCTAAATCCCAGTTGTCATTATGTTTTATTCTTTACAGAAGTCCAACAGA
TAATAAGGATCAACTGAGTGTTCCTTTAGGACAGATCAAAGTATATGGCA
AAGTCTGGAATGTACTGGAAAATATACATGGATCCTCAGAATAGTTGCTC
AATTTCATTTGCCCTCTATCTTAAGGTCACTATTACTGTTATGAAAAGTC
ATAACCAATGCAACTTGAGGAGGAAGAGGTTTATTTGCCTTACCTGTCTA
TATAATTATTCTTTCACTGAAGGAATTCATAAACAAAACTCAAAGAAGGT
ATTTACCCTTATCACTGGATTTTATGCCGATACATTGACAACCCCTGCTT
TTGATGGACNCGAAAACCCTAATTTTCTTATAAAAGTTTATGTACC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCTTCTCCTTTCCTTTTCTCTTCTAGTCTCTCTCTCCCTTCTCCC
TTCTTTCCTCCCCTCCCCTACCCTCCCCTCCTCACGTTTCCTTCCCCTCC
CATCTTCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTT
CCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTT
CCTTTCCTTTCCTTTCCCCTTTCCTTTCCCCTTTCCTTTGCCCTTTCCCC
TTTCCTTTCCTTTGCCCTGGCCCGTTTCGCCTTTCCGTTCCGTTCCGTTC
CGTTCCGTTCCGTTCCGTTCCGTTCCGATCCGGTTTGCTTTGATGTGCAC
TGGGCTGGCCTGGTCTGGCCAGTGCGGTTCCGTTTCGTGTCGTTCCGTTT
CTGTGAGATTCGGTTCGTGTCCTTTCATTTACTATGCTTTGCTTTGATTT
GGGTTGGTGTGAAGAGCTGTGCTTTGCTTGGGTTAGCTGTAGTATGAGAG
ACGGGCAAAGACGGTGAAAAGAAAAGATAGTCAATAGGGGTGGGGGGCCT
CAGTTAAGGATTATTTGAAGAAGGTTTTTGACGATATATTTAACATTGAC
GTAGAGGTGAGTGGATTGTAGAGGGGATGTATGAGAAAAGATAAAAGCAA
AAATTTAGCTAGGGTTGTGTGTTACAATCAATAGGTGTGGTTTGGATAAA
TGATAATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_c01.b1 MSMg01no382_c01.b1 CHROMAT_FILE:
MSMg01no382_c01.b1 PHD_FILE: MSMg01no382_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:46 2005
         (352 letters)



>mm_chr9_26107563_26108314
          Length = 752

 Score =  621 bits (321), Expect = 0.0
 Identities = 345/353 (97%), Gaps = 2/353 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttttctccctttccttggttgacagct-ttcattttttcataattgactaactttattc 59
           ||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct: 201 gttttctccctttccttgggtgacagctctt-attttttcataattgactaactttattc 259

                                                                       
Query: 60  tttctctttttgttccttattagattatgtttatcatcccttcagcattataatccacat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttctctttttgttccttattagattatgtttatcatcccttcagcattataatccacat 319

                                                                       
Query: 120 tgagtgataaaaacgggattgtttgttgtcttggatggatgttgcctctatttctcatct 179
           |||||||| |||| ||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 320 tgagtgatgaaaatgggattggttgttgtcttggatggatgttgcctctatttctcttct 379

                                                                       
Query: 180 tcctaaatcccagttgtcattatgttttattctttacagaagtccaacagataataagga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcctaaatcccagttgtcattatgttttattctttacagaagtccaacagataataagga 439

                                                                       
Query: 240 tcaactgagtgttcctttaggacagatcaaagtatatggcaaagtctggaatgtactgga 299
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcaactgagtgttcctctaggacagatcaaagtatatggcaaagtctggaatgtactgga 499

                                                                
Query: 300 aaatatacatggatcctcagaatagttgctcaatttcatttgccctctatctt 352
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaatatacatggatcctcagaatagttgctcaatttcatttgccctctatctt 552


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)