Query= MSMg01no382_i23.b1 MSMg01no382_i23.b1 CHROMAT_FILE:
MSMg01no382_i23.b1 PHD_FILE: MSMg01no382_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:20 2005
(482 letters)
>mm_chr9_71539557_71540438
Length = 882
Score = 681 bits (352), Expect = 0.0
Identities = 476/568 (83%), Gaps = 86/568 (15%)
Strand = Plus / Plus
Query: 1 gtatgaatttctcataaaggtagcaaaagattgtttttaaaggggagaaacgaaaaaaga 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 115 gtatgaatttctcataaaggtagcaaaagattgtttttaaaggggagaaaagaaaaaaga 174
Query: 61 agggtttttctagaaccaccaatagagtatctatatggccagtgctaaaacagctgtgac 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 175 agggtttttctagaaccaccaatagagtatctatatggccagtgctaagacagctgtgac 234
Query: 121 tgccctggggaagtcacattagcataagcctcattttctgagcatctctttctcttagct 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 235 tgccctggggaagtcacattagcatgagcctcattttctgagcatctctttctcttagct 294
Query: 181 tcaagcctgtattaaaagcatcttcaataaaatccccatctctgcttcatc--ac----- 233
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 295 tcaagcctgtattaaaagcatcttcaataaaatccccatctctgcttcatcttactagct 354
Query: 234 -----------cagta--a---------tggag---caaaca---------act----tg 255
||||| | ||||| | |||| ||| ||
Sbjct: 355 gaattttctgtcagtaccaaaacctaagtggagaccctaacagagtagggaactcgtctg 414
Query: 256 cc----------------------------------cta---tag----tttgccttttg 274
| ||| ||| |||||||||||
Sbjct: 415 gctgttgaggttgacggtgtggagctgggtctctgtctaaactagagagtttgccttttg 474
Query: 275 tgaaattaactgaatgatgctggctcaaactagttcccttgtccggaggtgaccagggca 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tgaaattaactgaatgatgctggctcaaactagttcccttgtccggaggtgaccagggca 534
Query: 335 gaaggactttttttctccatgtgtgacgctcgctttttcttacacatttccagagtcctg 394
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 535 gaaggactttttttctccatgtgtgacgctcgctttttcttacacattttcagagtcctg 594
Query: 395 aacacatgactctttctgtacttcaaaactcactaaaccacatctaatcacttctcggag 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 aacacatgactctttctgtacttcaaaactcactaaaccacatctaatcacttctcggag 654
Query: 455 cacctatttactgtgtaatgattgccat 482
||||||||||||||||||||||||||||
Sbjct: 655 cacctatttactgtgtaatgattgccat 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_i23.g1 MSMg01no382_i23.g1 CHROMAT_FILE:
MSMg01no382_i23.g1 PHD_FILE: MSMg01no382_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:20 2005
(205 letters)
>mm_chr9_71708769_71709373
Length = 605
Score = 377 bits (195), Expect = e-109
Identities = 202/205 (98%), Gaps = 2/205 (0%)
Strand = Plus / Minus
Query: 1 agcagctcctgggtttctcttgtataattcaaagtgaatatttgtgtactttaaagttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agcagctcctgggtttctcttgtataattcaaagtgaatatttgtgtactttaaagttta 259
Query: 61 taaggctattttgtttttgttgtaatttagaatcttagttaaaaaacaaaagttatcagg 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 258 taaggctattttgtttttgttgtaatttagaatattagttaaaaaacaaaagttatcagg 199
Query: 121 gctggagagatggctcagtggttaagagcaccctggctgctcttccagagtggtcatgag 180
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 198 gctggagagatggctcagtggttaagagcaccctggctgctcttcc--agtggtcatgag 141
Query: 181 ttcaattcccagcaaccacatggtg 205
|||||||||||||||||||||||||
Sbjct: 140 ttcaattcccagcaaccacatggtg 116
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 605
Length adjustment: 8
Effective length of query: 197
Effective length of database: 597
Effective search space: 117609
Effective search space used: 117609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
