Query= MSMg01no382_n10.b1 MSMg01no382_n10.b1 CHROMAT_FILE:
MSMg01no382_n10.b1 PHD_FILE: MSMg01no382_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:41 2005
(533 letters)
>mm_chr9_57774218_57775150
Length = 933
Score = 967 bits (500), Expect = 0.0
Identities = 521/528 (98%), Gaps = 1/528 (0%)
Strand = Plus / Plus
Query: 6 ggaattccataaaatctttaattcatctaaacagcattatctcaagaacttctttcatct 65
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattccataaaatcattaattcatctaaacagcattatctcaagaacttctttcatct 266
Query: 66 tcatgttgatctgcaggagacttgctcaacagagtgggctatcacccaggaagtaattac 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tcatgttgatctgcaggagacttgctcaacagagtgggctatcacccaggaagtaattac 326
Query: 126 accaggctgtaggcaatgagggtctctcggtgtccactcacaccaagccagattgagtga 185
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 327 accaggctgtaggcaatgagggtctctcggtgtccactcacaccaagccagat-gagtga 385
Query: 186 ggagcatggcaatggcaaacatgagaaagcaagcacatcagtagcaaggaatcctgggag 245
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 386 ggagcatggcaatggcaaacatgagaaagcaagcacgtcagtagcaaggaatcctgggag 445
Query: 246 aagtctctgggtcacacctttccagagcgcacattgtcgtcgctctagggagctcacttg 305
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aagtctctgggtcacgcctttccagagcgcacattgtcgtcgctctagggagctcacttg 505
Query: 306 cccactgtagctcttcttgcatggcacccgccagtacttaaaagctataaggtaaaataa 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cccactgtagctcttcttgcatggcacccgccagtacttaaaagctataaggtaaaataa 565
Query: 366 accattttcttcccaagttacttgtgatcatggtattttatcacagtggcagaaaccctg 425
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 acctttttcttcccaagttacttgtgatcatggtattttatcacagtggcagaaaccctg 625
Query: 426 acttaacacagtgtactaacatagaaagatcactttccactacacctcattgtaaacaca 485
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 626 acttaacacagtgtactaacatagaaagatcactttccactacacctcatggtaaacaca 685
Query: 486 acttaagctaggtgtgatgacgtgtatctataatcttggcactcagaa 533
||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 686 acttaagctaggtgtgatgacatgtatctataatcttggcactcagaa 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_n10.g1 MSMg01no382_n10.g1 CHROMAT_FILE:
MSMg01no382_n10.g1 PHD_FILE: MSMg01no382_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:41 2005
(141 letters)
>mm_chr9_57961731_57962271
Length = 541
Score = 273 bits (141), Expect = 4e-78
Identities = 141/141 (100%)
Strand = Plus / Minus
Query: 1 cttgctcatagttccgggggccaccttggggattcctgcgattttgaaccgtaatttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cttgctcatagttccgggggccaccttggggattcctgcgattttgaaccgtaatttcct 282
Query: 61 cccgcaagaccctgcggtccaggttcctgtggaagagggaggagggtgtgatgagatcga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 cccgcaagaccctgcggtccaggttcctgtggaagagggaggagggtgtgatgagatcga 222
Query: 121 ccccgcagtacctcttccaaa 141
|||||||||||||||||||||
Sbjct: 221 ccccgcagtacctcttccaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 541
Length adjustment: 8
Effective length of query: 133
Effective length of database: 533
Effective search space: 70889
Effective search space used: 70889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
