Query= MSMg01no383_c01.b1 MSMg01no383_c01.b1 CHROMAT_FILE:
MSMg01no383_c01.b1 PHD_FILE: MSMg01no383_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:05 2005
(570 letters)
>mm_chr9_29411558_29412527
Length = 970
Score = 1038 bits (537), Expect = 0.0
Identities = 543/545 (99%)
Strand = Plus / Minus
Query: 6 gaattctcacagacttggccgcgtcaaaagttttaaacatgaaagcaaaagtggctacct 65
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gaattctcacagacttggctgcgtcaaaagttttaaacatgaaagcaaaagtggctacct 663
Query: 66 tgaggaagcctccagggacggcaagctagggagctaagatcagcaggaggaagcttatcg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tgaggaagcctccagggacggcaagctagggagctaagatcagcaggaggaagcttatcg 603
Query: 126 ctctctgcccttcagctcctgtttactgggttttgagttttatatctcaatactcatgag 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ctctctgcccttcagctcctgtttactgggttttgagttttatatctcaatactcatgag 543
Query: 186 gacactgcttattttttaaattaaaattcatcaggataaaggaatttttgtaaaataagt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gacactgcttattttttaaattaaaattcatcaggataaaggaatttttgtaaaataagt 483
Query: 246 taaatttcatagcatagattggtttgcaatttatacccaattaacacacaataagaaact 305
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 482 taaatttcatagcatagattggtttgcaatttatacccagttaacacacaataagaaact 423
Query: 306 ctgtttcaaagtatacaaagtatatgctctgggtgacaactgccacagacaccaaaacat 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ctgtttcaaagtatacaaagtatatgctctgggtgacaactgccacagacaccaaaacat 363
Query: 366 ttatcagcaatttctagagcagcactttgctcattagtaatcacttccctttcacttcct 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttatcagcaatttctagagcagcactttgctcattagtaatcacttccctttcacttcct 303
Query: 426 ccaaattcctggagagcttgtatctacattctgactgggctgccctcatctgcatagtcc 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ccaaattcctggagagcttgtatctacattctgactgggctgccctcatctgcatagtcc 243
Query: 486 atatgtatagaactattctgtctgtctgtaatatggctatgatatgatatgatatgatat 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 atatgtatagaactattctgtctgtctgtaatatggctatgatatgatatgatatgatat 183
Query: 546 gatat 550
|||||
Sbjct: 182 gatat 178
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no383_c01.g1 MSMg01no383_c01.g1 CHROMAT_FILE:
MSMg01no383_c01.g1 PHD_FILE: MSMg01no383_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:05 2005
(489 letters)
>mm_chr9_29231850_29232738
Length = 889
Score = 868 bits (449), Expect = 0.0
Identities = 472/485 (97%), Gaps = 11/485 (2%)
Strand = Plus / Plus
Query: 1 ttcacttttcactttagtggaagagaattgtgtcagtaatcattgaaaacaatagatata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcacttttcactttagtggaagagaattgtgtcagtaatcattgaaaacaatagatata 260
Query: 61 cacaggcctgaacccctggctgtgtgcatcttatgacttgcttcatgggaggctgataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacaggcctgaacccctggctgtgtgcatcttatgacttgcttcatgggaggctgataaa 320
Query: 121 ctataaataacttcattggggaaaccatagcattttttctctcttccttcagatgcagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctataaataacttcattggggaaaccatagcattttttctctcttccttcagatgcagtg 380
Query: 181 gaataacacgcgcaaggctctggagaatttaagaaaagacaagccccaaaccaaaatggg 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 gaataacacgcgcaaggctctggagaatttaagaaaagacaa-------accaaaatggg 433
Query: 241 acaatattagaaaagtttccaaaaacaaaaggggaaggcttggaataaataagaaaggtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 acaatattagaaaagtttccaaaaacaaaaggggaaggcttggaataaataagaaaggtt 493
Query: 301 gtttttgcttgcctagctgggatgaacaaagtcctgtcacattcattggaaacacatagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gtttttgcttgcctagctgggatgaacaaagtcctgtcacattcattggaaacacatagt 553
Query: 361 gtaggcagatgatgtgaaatatgaatgactgtcattcataaatatacatacatacacaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gtaggcagatgatgtgaaatatgaatgactgtcattcataaatatacatacatacacaca 613
Query: 421 cacaaatacatacatacatacatacatacacacatacaaatatacgtatgtatatatgtg 480
|||||||||||| || |||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 614 cacaaatacata--ta--tacatacatacacacatacaaatatatgtatgtatatgtgtg 669
Query: 481 tgtgt 485
|||||
Sbjct: 670 tgtgt 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
