BAC Information

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BAC

Clone NameMSMg01-383F02
Chromosome9 (Build37)
Map Location 27,159,151 - 27,159,379
singlet/doubletsinglet
Overlap genenone
Upstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b
Downstream geneSpata19, LOC666440, LOC100041202, Opcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383F02.T7 (MSMg01no383_f02.b1)MSMg01-383F02.TJ (MSMg01no383_f02.g1)
ACCAG487015AG487016
length734755
length of high quality
(start - end)
392 (107 - 498)230 (112 - 341)
definitionCHROMAT_FILE: MSMg01no383_f02.b1 PHD_FILE: MSMg01no383_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:21 2005CHROMAT_FILE: MSMg01no383_f02.g1 PHD_FILE: MSMg01no383_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCATACCTAGACATGATAAAAGCAATCTACAGCAAACCTG
TAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCGATCCCACTAAAA
TCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGT
ACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGA
TACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATG
ATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAATTCCTAAACCT
GATAAACAGCTTTGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGT
CAATGGCCTTTCTGTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGG
GAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTCCGCGT
GACTCTAACAAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTC
TGAAGAGAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGC
TCGGGGATTGGCAGGATCAACATTGTAAAAATGGCTATGTTGCCGAAAGC
AATCTACAGATTCAATGGACTCCCCATGAAAATTTTCACTCAATTCTTCA
ACGAATTAGAAGGAGCAATTTCCAAATTCATCTG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAGCAGCACAAGCGACTCAGCTTG
AAGCCAGGGCCTTCCCATCCAGCTTAACTCCATGGCAACATGAATGAGTG
GGCTTGCTGTTCTTTTGGGTCTTAAAGAAATTTGCCCCACCAATCCCATC
TCCCACCAACATTGACATTCCTGGATCTGTTTTAAGGAAATGCATAGCAA
ACTCTCCCTTCACCCACATTCAGACCATCCAGGCTCTCTTTCCTTCTTGC
CCCGACTTGTGTGTGGCTCCAGGACCCCTAGCTTGTGCATGGTTTCCGCT
AGGAGAGGTGGTTGGGTTAGGGCCAGAATTGAGGATTTATTAGGAAAGTT
AGCAGAGTCAACCTAAATTAACGAGAGGTCTGACCAACAGATGATTTGAG
GCGCGGGGTGGTTTACTGCTGCGATCATAGAGATCAGGCTGCAGTGTAAC
AGAAGCGTTGCCGATGCTTCACAGATATATATCATCTGGCTGGTGCAGGA
CCGATTGTGCACATGTTGTTGGTGGAGCCGCGCTCTGACGCACTGAAATA
TTCTTATCTTTTCCCGTCGAGCAATGAATTCCGTTAATCATAGCTTTCCG
CTAGTTGTTTAAAAATACGGTCAATCCCAATGCTCAAAGTGAAAAACTCT
ATGTAATTTTGTTATCTTTTAGTTCATATATATTACCCCCTTCCAAATTT
ACTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_f02.g1 MSMg01no383_f02.g1 CHROMAT_FILE:
MSMg01no383_f02.g1 PHD_FILE: MSMg01no383_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:21 2005
         (230 letters)



>mm_chr9_27158951_27159579
          Length = 629

 Score =  414 bits (214), Expect = e-120
 Identities = 226/230 (98%), Gaps = 1/230 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcccatccagcttaactccatggcaacatgaatgagtgggcttgctgttcttttgggtc 60
           |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ttcccatccaacttaactccatggcaacatgaatgagtaggcttgctgttcttttgggtc 260

                                                                       
Query: 61  ttaaagaaatttgccccaccaatcccatctcccaccaacattgacattcctggatctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 ttaaagaaatttgccccaccaatcccatctcccaccaacattgac-ttcctggatctgtt 319

                                                                       
Query: 121 ttaaggaaatgcatagcaaactctcccttcacccacattcagaccatccaggctctcttt 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttaaggaaatgcagagcaaactctcccttcacccacattcagaccatccaggctctcttt 379

                                                             
Query: 181 ccttcttgccccgacttgtgtgtggctccaggacccctagcttgtgcatg 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccttcttgccccgacttgtgtgtggctccaggacccctagcttgtgcatg 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 629
Length adjustment: 9
Effective length of query: 221
Effective length of database: 620
Effective search space:   137020
Effective search space used:   137020
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)