BAC Information

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BAC

Clone NameMSMg01-384C10
Chromosome9 (Build37)
Map Location 4,418,952 - 4,419,517
singlet/doubletsinglet
Overlap geneGria4
Upstream geneCwf19l2, LOC384911, Gucy1a2, LOC100039236, LOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik
Downstream geneEG664889, Casp1, Casp4, Casp12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384C10.T7 (MSMg01no384_c10.b1)MSMg01-384C10.TJ (MSMg01no384_c10.g1)
ACCAG487655AG487656
length744727
length of high quality
(start - end)
537 (37 - 573)569 (66 - 634)
definitionCHROMAT_FILE: MSMg01no384_c10.b1 PHD_FILE: MSMg01no384_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:23 2005CHROMAT_FILE: MSMg01no384_c10.g1 PHD_FILE: MSMg01no384_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACC
AGACTTTCAAAGAAGACCTGATACCAATATTTCTAAAACTATTTCATAAA
ACAGAAGCAGAAAGTACACTACCTAATTTATTTGATGAAACCACAATTAC
TCTGATACCAACACCACACAAGAACCCAACCAAAAAAGAGAGCTAAAGAC
TAACCTCACTTATGAATATCAATGCAAAAAATACTCCATAAAATTCTTGC
AAACTGAATCCAAGAGCTCATCAAAACCATCATTCACCATGATCAAGTAA
GCTTCATACCAGGGATGCAAGGTTGGTTTAATATATGAAAATCCATTAAT
GTAATCCACTATGTAAACAAACTCAAAGAAACTATCACATGATCAGTTCC
TTGGATGCAGAAAAAGCATTTAACAAAATACAACATCCATTTATTCTAAA
AGTATTAGAGATCAGGAATTCAAGGCCCATACCAAAACATAATAAAAGCA
ATTTATGGCAAAACAAAAGCCAATATCAAATTAAATGGAGATATACTTGA
GGAAATCCCACTAAAATTAGGGACAAGACAAGGATGTCCACTCTCCTCAT
ATCTATTAAATATAATACTCAAACTGCTACCTANNGACATAAGAAAACAA
AAAGAGATCAGGGGGATACCAATTGGCAAAGGAGAAATAAAGGGATCACT
ATTTGCTGATATGATAGGATACCTAAGTGACCCCCGAAATTCTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTATGCAGCAAAACAGAGTCAAGTAAAATTTCCACA
CAGGGTGTGTTGGTTTTGGAACGATGGCTCATTCCCAGACTCAAGGACTC
TACCTTTGACAACTTATTCTGTTAACAAATGAGCCCAAGATCTAGAAATA
AATATGCAGAAATAATAAAAACAAGCTACATTTTCTTATATGGCCTATTC
CTTGACTTCTGCCATATGGAGTCTCAGAGTTTCCCAAATAATAGGGGAGA
ATAAGCTCTGTAGATAGATACTGTAAGAAAAACTGGTGTTTTAGTCTTTT
GGGTGAGTACAAAACCCACAATTTTGTACACTGAACAGGATTATAAATTA
TATTGATAACATGAGTGACCCGTAGTCTTTTAGGTTTTTCATTGCAGATG
GATGACTTCATGCCAACATTTTCTTCACTTGTGTTTTTCTTATTATTTCT
GATAGACAAACACAACCTATGAGCCAACTTGTGTGACAGAGTGAAGGTTA
CAGGAAACAAGGTGACCAACAACTTTTACATTAAAAAAAGTCTCTAAAGT
TTATTACAGTGATGGCACTATTATCAATTATTGCAATGTATTGTTCCCTA
AGATGGTTAGAAAAAACAATTGCGTTGTCCTCTACTGGATTAACTTCAGT
TAAAAAGCAAGCATGTTTCAGTATTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_c10.g1 MSMg01no384_c10.g1 CHROMAT_FILE:
MSMg01no384_c10.g1 PHD_FILE: MSMg01no384_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:23 2005
         (569 letters)



>mm_chr9_4418752_4419717
          Length = 966

 Score = 1069 bits (553), Expect = 0.0
 Identities = 564/569 (99%), Gaps = 3/569 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgcagcaaaacagagtcaagtaaaatttccacacagggtgtgttggttttggaacgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgcagcaaaacagagtcaagtaaaatttccacacagggtgtgttggttttggaacgat 260

                                                                       
Query: 61  ggctcattcccagactcaaggactctacctttgacaacttattctgttaacaaatgagcc 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctcattcccagactcaaggactttacctttgacaacttattctgttaacaaatgagcc 320

                                                                       
Query: 121 caagatctagaaataaatatgcagaaataataaaaacaagctacattttcttatatggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagatctagaaataaatatgcagaaataataaaaacaagctacattttcttatatggcc 380

                                                                       
Query: 181 tattccttgacttctgccatatggagtctcagagtttcccaaataataggggagaataag 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattccttgacttctgcaatatggagtctcagagtttcccaaataataggggagaataag 440

                                                                       
Query: 241 ctctgtagatagatactgtaagaaaaactggtgttttagtcttttgggtgagtacaaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctgtagatagatactgtaagaaaaactggtgttttagtcttttgggtgagtacaaaac 500

                                                                       
Query: 301 ccacaattttgtacactgaacaggattataaattatattgataacatgagtgacccgtag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccacaattttgtacactgaacaggattataaattatattgataacatgagtgacccgtag 560

                                                                       
Query: 361 tcttttaggtttttcattgcagatggatgacttcatgccaacattttcttcacttgtgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttttaggtttttcattgcagatggatgacttcatgccaacattttcttcacttgtgtt 620

                                                                       
Query: 421 tttcttattatttctgatagacaaacacaacctatgagccaacttgtgtgacagagtgaa 480
           |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcttatt---tctgatagacaaacacaacctatgagccaacttgtgtgacagagtgaa 677

                                                                       
Query: 481 ggttacaggaaacaaggtgaccaacaacttttacattaaaaaaagtctctaaagtttatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ggttacaggaaacaaggtgaccaacaacttttacattaaaaaaagtctctaaagtttatt 737

                                        
Query: 541 acagtgatggcactattatcaattattgc 569
           |||||||||||||||||||||||||||||
Sbjct: 738 acagtgatggcactattatcaattattgc 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 966
Length adjustment: 10
Effective length of query: 559
Effective length of database: 956
Effective search space:   534404
Effective search space used:   534404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)