BAC Information

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BAC

Clone NameMSMg01-384G21
Chromosome9 (Build37)
Map Location 7,649,962 - 7,650,434
singlet/doubletsinglet
Overlap geneMmp20
Upstream geneLOC100039418, EG547034, Dync2h1, LOC100039658, Dcun1d5, Mmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8, Mmp27
Downstream geneMmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik, Trpc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384G21.T7 (MSMg01no384_g21.b1)MSMg01-384G21.TJ (MSMg01no384_g21.g1)
ACCAG487868AG487869
length790763
length of high quality
(start - end)		433 (32 - 464)473 (63 - 535)
definitionCHROMAT_FILE: MSMg01no384_g21.b1 PHD_FILE: MSMg01no384_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:43 2005CHROMAT_FILE: MSMg01no384_g21.g1 PHD_FILE: MSMg01no384_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTATACGACTCACTATTTTCAGAGGATCCGCGGAATTCTCTGTTT
GTGCCCCAAGCCCAATTTTTAATATGTCATTTGGGTTTTGTTGGTGTTGG
TGTTTTGAGTTTTTGTTTATTTTGGTTATTAATCCTGTGCCATATGTAGA
GCTGACATAGATTCTCTCCCATCTGGACTCACTCCCTTTCTAGCTTTTAT
TAGGAAGCAACAGGCTTTTAAGGAACAATAATAAAATACAATAAAATGCA
GTAAGATAAAACAAAAAAATCAGAGTTGGACCAGATAAGCAAACAGGAGC
AAAAGAGCCCAAGAGAAGGCACAACAGATTCTCTCATATGCACACACAGG
AACCACATACTAACACTAAACTTGGAGCTATAGAATATTCATAGAGAACT
TCCTACCGACCCGTGCAGCCCTTGTGTATGTTGCTCAGTCTCTGAGAGCT
CTTGCAATTAATCAGGTGATCATATGTCACAAATTAATCATACATATTGA
CTTAGAGGGCCTTATTTTCTTGGTGTCCTCTATCCCCTCTGGCTTTATTC
TCCTTCTTCCTAATCCTCCCAAGGATTCCTTGGATCCCGTGGACATAAAC
TTGATGGCGACCTTCACTTTCACTTGAGTTTTCTAATTCCTCTTCCCCTT
TTTTTCTTCCCCTTCCCGTATCCCTCCTCACCTGTCTCCTCTCTTCTCTC
TTATCACATCTCCTTCTCTTCTCGTTTCTTCCCTTCCCTTTCCTCCCCTT
TCCTTTTTCCTTCTCCCTTCAACTTTCCTCCTCTTCACTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGGGTTTTGCCTTTTTTAAACCCCTGCAAACCCAAAAT
TCCTCAGGGCCATTTTCTGGGAACCCACAGATGGACCTAGCCAGAGAGTT
CAATCAATCTGACCAGTATTCAATTTAAAGCCTGCTTCAAACTTGACTTT
AAATTATGGTAGTGATCTTATTTTCAACAAATGAAATTAACAGGGACCCA
GAGCAATTGCCACTGGACTGTATTAGAAACCTGGCCAGGCAAATAACCTC
TAGATAGCCAGGAAGAAACTGAGTAAGAGCCATAAAATATTCAGTGAGGT
GGACATTTGGTCAGAGCTGAGGTGTGGCCAGTTCTAGAGGTGTGAACAGA
CCATCAGACCTGGGGAAACCCAGGGAACCCGAGAGAGCAGGGATGGTTTT
AGGGATCTGCTTGTATTTCTGTCTCCCTTTTCTTCTTGTTCTGTTCCTAT
CCAGGGACACTGCCTCATTTTCTCCGCTGCCTCGTTTTCTCCAACCGTGT
CCTTATTGACTCCTTCTCTGTCACTTGTGCACAGTCACCAGCCCCTCTCT
GCCTTCTCCCTGTCTATCTCCAATTAATTTCCTAGCCAGAACAGATCATT
GGGGGCCTTTATTTCCGGGCCCAGATTTTTTTCACCGCCTGGAAAAAAAG
AGAGGGCCACCCCCTTCTTAAAAAAAATTCCAAATTGAGTAAGCCCCTGC
GTTTTTTTTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_g21.g1 MSMg01no384_g21.g1 CHROMAT_FILE:
MSMg01no384_g21.g1 PHD_FILE: MSMg01no384_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:43 2005
         (473 letters)



>mm_chr9_7649762_7650634
          Length = 873

 Score =  907 bits (469), Expect = 0.0
 Identities = 472/473 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggttttgccttttttaaacccctgcaaacccaaaattcctcagggccattttctggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tgggttttgccttttttaaacccctgcaaacccaaaattcctcagggccattttctggga 614

                                                                       
Query: 61  acccacagatggacctagccagagagttcaatcaatctgaccagtattcaatttaaagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 acccacagatggacctagccagagagttcaatcaatctgaccagtattcaatttaaagcc 554

                                                                       
Query: 121 tgcttcaaacttgactttaaattatggtagtgatcttattttcaacaaatgaaattaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tgcttcaaacttgactttaaattatggtagtgatcttattttcaacaaatgaaattaaca 494

                                                                       
Query: 181 gggacccagagcaattgccactggactgtattagaaacctggccaggcaaataacctcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gggacccagagcaattgccactggactgtattagaaacctggccaggcaaataacctcta 434

                                                                       
Query: 241 gatagccaggaagaaactgagtaagagccataaaatattcagtgaggtggacatttggtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gatagccaggaagaaactgagtaagagccataaaatattcagtgaggtggacatttggtc 374

                                                                       
Query: 301 agagctgaggtgtggccagttctagaggtgtgaacagaccatcagacctggggaaaccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 agagctgaggtgtggccagttctagaggtgtgaacagaccatcagacctggggaaaccca 314

                                                                       
Query: 361 gggaacccgagagagcagggatggttttagggatctgcttgtatttctgtctcccttttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggaacccgagagagcagggatggttttagggatctgcttgtatttctgtctcccttttc 254

                                                                
Query: 421 ttcttgttctgttcctatccagggacactgcctcattttctccgctgcctcgt 473
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 253 ttcttgttctgttcctagccagggacactgcctcattttctccgctgcctcgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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