BAC Information

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BAC

Clone NameMSMg01-386B19
Chromosome9 (Build37)
Map Location 23,961,968 - 23,962,152
singlet/doubletsinglet
Overlap geneNpsr1
Upstream geneBmper, LOC100040866, LOC100040878, LOC100040893
Downstream geneDpy19l1, Cypt4, Tbx20, LOC666251, LOC100040960, Herpud2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386B19.T7 (MSMg01no386_b19.b1)MSMg01-386B19.TJ (MSMg01no386_b19.g1)
ACCAG489155AG489156
length732735
length of high quality
(start - end)
243 (76 - 318)662 (74 - 735)
definitionCHROMAT_FILE: MSMg01no386_b19.b1 PHD_FILE: MSMg01no386_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:51 2005CHROMAT_FILE: MSMg01no386_b19.g1 PHD_FILE: MSMg01no386_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCCGAGGCGCCGCGG
AATTCACATGAATTGGCAAACACGGAGAGCTGCAACACTTCCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTGCTCTGGGCAAGAGCCTCACTTCCTCTGCCCAAAC
ATACTTTTTGAAGAGTGACAAAGGTGGAGAGTTCCTAGGTTTGTTAGCAA
ATTGTACTTCAACTACTTTCCTTTGCCAGTATTTAAAGGTCTGGCCCTCC
CAGAAAGAGATGATTTGAGTGTGTTGTAAAAATAATGTGCTTTTCTTCTT
TCTTTTGTGGTATATTCAATGGCAGCAGCTCTCGTCAGTGTTCCCTCCTT
ATTGCATTTGAATAAAACAGACAAGTAAGTCTAGAAGATGATAAATGACT
AATAAATTTAATTGGCACTTTAGCACATAAAATAAAAACAGTCATTAAGT
TCATCCAGAAAATTGTTAGAATGGCTGTGCTAAAAATTGCAGGATGTGCC
AAAATAGCAGCTGTTTTCCTTACAAGGTCAAGATTAAGCCTCACGCCAAG
ATGCCAAGCAGATTCATTTTGACCTACGTGGCCTACAAGGCTATTTGCCA
ATTTGATAGTCAGATGAGTGTCCATATTTTTTTTGGAGTAAGAAATCCTC
TTTTATAAAATATCCTTAAATGTGTTACAAAG
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATC
AGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG
GATATTAGCCCAAAACCTAAGATACCCAAGATATAAGATACAATTTCCTA
AACACATGANACTCAAGAAAAATGAAGACTGAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_b19.b1 MSMg01no386_b19.b1 CHROMAT_FILE:
MSMg01no386_b19.b1 PHD_FILE: MSMg01no386_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:51 2005
         (243 letters)



>mm_chr9_23961678_23962320
          Length = 643

 Score =  335 bits (173), Expect = 2e-96
 Identities = 182/185 (98%)
 Strand = Plus / Minus

                                                                       
Query: 59  ctctctctctctctctctctctctctctctctgctctgggcaagagcctcacttcctctg 118
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 475 ctctctctctctctctctctctctctctctctgctctgggcaagtgcctcacttcctctg 416

                                                                       
Query: 119 cccaaacatactttttgaagagtgacaaaggtggagagttcctaggtttgttagcaaatt 178
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cccacacatactttttgaagagtgacaaaggtggagagttcctaggtttgttagcaaatt 356

                                                                       
Query: 179 gtacttcaactactttcctttgccagtatttaaaggtctggccctcccagaaagagatga 238
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gcacttcaactactttcctttgccagtatttaaaggtctggccctcccagaaagagatga 296

                
Query: 239 tttga 243
           |||||
Sbjct: 295 tttga 291


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)