Query= MSMg01no386_i08.b1 MSMg01no386_i08.b1 CHROMAT_FILE:
MSMg01no386_i08.b1 PHD_FILE: MSMg01no386_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:21 2005
(245 letters)
>mm_chr9_28317533_28318177
Length = 645
Score = 424 bits (219), Expect = e-123
Identities = 237/243 (97%)
Strand = Plus / Plus
Query: 3 tgtttgagggcaaggaaatgtcattttctctatgacttggagtctcttatctacttatat 62
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 203 tgtttgagggcaaggaaatgtcattttctctatgacttggagtctcttatctacttatct 262
Query: 63 atctataagagtagttaaaattctaggttgaatgggaaataatgctctgagaggcaagtt 122
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atctataagagtagctaaaattctaggttgaatgggaaataatgctctgagaggcaagtt 322
Query: 123 aagaaagcttggctgcaactacacaagtgaacagggtcctcttgaaattgccaaggtctc 182
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 323 aagagagcttggctgcaactacacaagtgaacagggtcctcttgaaactgccaaggtcac 382
Query: 183 cttggaactgttctggtcggtcatgctatttaagtaggcatcactggtctatgaacaata 242
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cttggaactgttctggccggtcatgctatttaagtaggcatcactggtctatgaacaata 442
Query: 243 ctg 245
|||
Sbjct: 443 ctg 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no386_i08.g1 MSMg01no386_i08.g1 CHROMAT_FILE:
MSMg01no386_i08.g1 PHD_FILE: MSMg01no386_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:21 2005
(486 letters)
>mm_chr9_28491688_28492577
Length = 890
Score = 862 bits (446), Expect = 0.0
Identities = 478/490 (97%), Gaps = 4/490 (0%)
Strand = Plus / Minus
Query: 1 ggtaagagactaaaagtatggagccacttgctctcttgtagagtacgttaatactctgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ggtaagagactaaaagtatggagccacttgctctcttgtagagtacgttaatactctgca 631
Query: 61 ttaaatttcctctggccccaaactatgagtattactcatggagggcaaggtttgaatgtt 120
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 630 ttaaatttcctctggccccaaactatgagtaatactcatggagggctaggtttgaatgtt 571
Query: 121 gctatgttagggtaatgggttatgataaactgaaagaga-taaaagacttgatagcacca 179
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 570 gctatgttagggtaatgggttatgataaactgaaagagattaaaagacttgatagcacca 511
Query: 180 ctaattcatcctttaagtaagtacaattgcgcttctgctcacagtaccaggatgtgtgag 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ctaattcatccttcaagtaagtacaattgcgcttctgctcacagtaccaggatgtgtgag 451
Query: 240 aagagacttttgtgtgtattggagctgttggctgactagcttcttaggacataggctgag 299
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 450 aagagacttctgtgtgtattggagctgttggctgactggcttcttaggacataggctgag 391
Query: 300 accactgtgcaaatt---gagaacaaaacagacatttcattttccacctccacaccagca 356
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 390 accactgtgcaaattgaggagaacaaaacagacatttcattttctacctccacaccagca 331
Query: 357 atgatgctacaagcgggctttaaatgtgtctcagtttatttaattccagtgcaaacaagg 416
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 330 atgatgctacaagcgagctttaaatgagtctcagtttatttaattccagtgcaaacaagg 271
Query: 417 cagacgacagacccaggccctgccacttcttttcctggcttctgcttctgtacatatctc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 cagacgacagacccaggccctgccacttcttttcctggcttctgcttctgtacatatctc 211
Query: 477 cagagcagat 486
||||||||||
Sbjct: 210 cagagcagat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 890
Length adjustment: 10
Effective length of query: 476
Effective length of database: 880
Effective search space: 418880
Effective search space used: 418880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
