Query= MSMg01no388_j15.b1 MSMg01no388_j15.b1 CHROMAT_FILE:
MSMg01no388_j15.b1 PHD_FILE: MSMg01no388_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:58 2005
(511 letters)
>mm_chr9_31424301_31425211
Length = 911
Score = 888 bits (459), Expect = 0.0
Identities = 496/519 (95%), Gaps = 22/519 (4%)
Strand = Plus / Plus
Query: 14 gaattcattcagtttttggaagagttgaaaattactgttagttcttcagtgtttggcaga 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gaattcattcagtttttggaagagttgaaaattactgttagttcttcagtgtttggcaga 273
Query: 74 gtgtatcagtagcttttggtgtgccatttttctgtttccttttgttgtaatttctatttt 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gtgtatcagtagcttttggtgtgccatttttctgtttccttttgttgtaatttctatttt 333
Query: 134 ctaatttcccagagagtttttttcttcttctttttgagccttctattattttgtcaaatt 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ctaatttcccagagagtttttttcttcttctttttgagccttctattattttgtcaaatt 393
Query: 194 tcatttcgttgtgttcagaaagatggtttatatgagttcatcccttctccctatccttct 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tcatttcgttgtgttcagaaagatggtttatatgagttcatcccttctccctatccttct 453
Query: 254 ccctctcttcctccccctcc---------cctcc--tcctcct---cctcctcc------ 293
|||||||||||||||||||| ||||| ||||||| ||||||||
Sbjct: 454 ccctctcttcctccccctcctccctctcccctcccttcctccttctcctcctcctcctct 513
Query: 294 ccttctctctctcctcctccagggttccatgggtgtagacctaactagcttggaacttgc 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ccttctctctctcctcctccagggttccatgggtgtagacctaactagcttggaacttgc 573
Query: 354 tgtgtagaccagggtggccct-gaactcacagagatcagccagcttctgcctcatgagtg 412
||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||
Sbjct: 574 tgtgtagaccagggtggcc-tcgaactcacagagatcagcccgcttctgcctcatgagtg 632
Query: 413 ctggtattaaaggtgtgcaccaacacacttaccttcagccttttaaatacttattactgc 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ctggtattaaaggtgtgcaccaacacacttaccttcagccttttaaatacttattactgc 692
Query: 473 ttgttttgtgacctaaatataatctaccttagaaaatac 511
|||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ttgttttgtgacctaaatataatctaccttagaaaatac 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_j15.g1 MSMg01no388_j15.g1 CHROMAT_FILE:
MSMg01no388_j15.g1 PHD_FILE: MSMg01no388_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:58 2005
(240 letters)
>mm_chr9_31581556_31582195
Length = 640
Score = 433 bits (224), Expect = e-126
Identities = 236/240 (98%)
Strand = Plus / Minus
Query: 1 tgtatgagaccactgaagtagatttaatatggggagggggcatccacacaaccataaata 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgtatgagaccattgaagtagatttaatatggggagggggcatccacacaaccataaata 381
Query: 61 tgtccttgagagcctaaaggttctccatgacccagaaccctgggacataattagtaaaga 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtccttgagagcctaaaggttctctatgacccagaaccctgggacataattagtaaaga 321
Query: 121 gcctggtgttgcagcagctgcttttgtaggctaaggacgaatgtggaaagtgtggttatg 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 320 gcctggtgttgcagcagctgcttttgtaggctgaggacgaatgtggaaagtgtgggtatg 261
Query: 181 gaatttttctctttgaataaatggggttgaggacactatgcagaggcaggggtcaagtag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gaatttttctctttgaataaatggggttgaggacactatgcagaggcaggggtcaagtag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
