BAC Information

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BAC

Clone NameMSMg01-388K08
Chromosome9 (Build37)
Map Location 43,735,971 - 43,738,410
singlet/doubletdoublet
Overlap geneLOC100042548
Upstream geneGrik4, Arhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29, LOC384931, Pvrl1
Downstream geneThy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388K08.T7 (MSMg01no388_k08.b1)MSMg01-388K08.TJ (MSMg01no388_k08.g1)
ACCAG491091AG491092
length749758
length of high quality
(start - end)		402 (42 - 443)491 (82 - 572)
definitionCHROMAT_FILE: MSMg01no388_k08.b1 PHD_FILE: MSMg01no388_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:01 2005CHROMAT_FILE: MSMg01no388_k08.g1 PHD_FILE: MSMg01no388_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,735,971 - 43,736,364)(43,737,932 - 43,738,410)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGTATGCTACCAATATTAGTCATCAGAGTGGTAATATTTATTATTTATC
TACTTGTTTTCTTATTTATTTATTTTGAGACAAGGTCTGGTTAAGTCATC
TAGGCTGGCCTCAGACTTGTAGCAGTTCTCCTGCCTCAGCAAGTGGTTAA
GGGAAAGCCACTGGACTTTTCCTCACAGACCGGATACAACTCGCTGCGGT
AAAGGCCTTAGTTTGGCTTTAGTGTTCAATGTACTGAGTTGTAGGAGGTC
CAAGGGAAATGGCTAAGATGCGAGTTCTAGACCGGAGTGGCAGCATCGGA
AGGGATAAGAAAGGGGTGTGATTCTGAGAAGGGGGTGTGATTCTGAGAAG
GGGGCGGGATTCTGAGAAGGGGGTGGGATTCTGAGAAGGAGGNGNNNTTN
NNNNNTNCCGGNNNNTTTTTTGTTTTTTTTTGTGTTTGTTTTTTTTTGTT
TTTTTTTTTTTGGTTTTTCGTTTTTGTTTTTTTTTTTTTTGTTNGGGTTT
TTTTTTTTTGTGTGGTTCTTTTTTTTTGTTGTTTGGGTTTGTTTTTGGTT
TTTTTTTTTGTTTTTGGGTGTGTCGTTTTGTATTTAATTATNATTATGTT
TTTTTGGGATTTTACTCCGTCTCTCTCACTCTCCCCGCCTTTCCCCTGTT
ATCCTTCCTCTCTTCCCTCCCTGCACTCTACATGCCCTTTCCCTCTCCA

NNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGGTTCCTTTCCTCCCC
TGTAGCTGGGATCATAGGCACACTGCAGTGCCTAGCTAATCCTGCCTAGT
ATGTAGGTTGTGCACACTACTTGATTTCTATGTTCAGACATCTCCCCTTT
GCTGGGTCTCTTACTGTAAGGGTCAACCCACTCCCCTCCTCCCTCTTGTC
TCCCTCTGCCCTGATCTTGCTGGAGAATTTTTAAAGGGACAGCTCTGTCA
GCAGGATTGAGAGTAGAGGGAACCCAGGAGCCACAAACACCTGTAAAACC
AATTTAAAAATCAGTCTAGCCAACCAGCCCCCAAAGGAGCCAAAGAGAAC
TACAGAGTAACTCAAAAGCAGACACTAATGGAGGAGAAAAGAAATGTAGT
TACATATTCATCAGGCTTTAAATATTCATGAGGACTGTAAAGCAGATTAA
TTTTCATGCCTCATTTCTCCCATGGTTCTCGCTGCCCATATTTTACTGCA
GCAGCAGCAGCAGCAGGAAAAGCAGCTATGGATCGCCTGGCCTTGGCTCT
GACCACCCAGCCAGGCGGGAAGGGGCAGGNAATGACTTTGGGAGTGAATA
TTAGTCTCCTGAGGGCCAGGGGTCCTCCTGCTGGGTGGGGACATATGAAA
AAAACAGGAACCCGCAAGGGTGGAGGAGAAATAGAAATTCTTTTACCAAA
AGTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_k08.b1 MSMg01no388_k08.b1 CHROMAT_FILE:
MSMg01no388_k08.b1 PHD_FILE: MSMg01no388_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:01 2005
         (402 letters)



>mm_chr9_43735767_43736568
          Length = 802

 Score =  708 bits (366), Expect = 0.0
 Identities = 387/394 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtatgctaccaatattagtcatcagagtggtaatatttattatttatctactt 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtatgcaaccaatattagtcatcagagtggtaatatttattatttatctactt 264

                                                                       
Query: 65  gttttcttatttatttattttgagacaaggtctggttaagtcatctaggctggcctcaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttttcttatttatttattttgagacaaggtctggttaagtcatctaggctggcctcaga 324

                                                                       
Query: 125 cttgtagcagttctcctgcctcagcaagtggttaagggaaagccactggacttttcctca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttgtagcagttctcctgcctcagcaagtggttaagggaaagccactggacttttcctca 384

                                                                       
Query: 185 cagaccggatacaactcgctgcggtaaaggccttagtttggctttagtgttcaatgtact 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 385 cagaccggatacaactcgctgcggtaaaggccttagtttggctttagtgttcaatgtatt 444

                                                                       
Query: 245 gagttgtaggaggtccaagggaaatggctaagatgcgagttctagaccggagtggcagca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagttgtaggaggtccaagggaaatggctaagatgcgagttctagaccggagtggcagca 504

                                                                       
Query: 305 tcggaagggataagaaaggggtgtgattctgagaagggggtgtgattctgagaagggggc 364
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  
Sbjct: 505 tcggaagggataagaaaggggtgggattctgagaagggggtgtgattctgagaaggggat 564

                                             
Query: 365 gggattctgagaagggggtgggattctgagaagg 398
           | |||||||||||||||| |||||||||||||||
Sbjct: 565 gtgattctgagaagggggcgggattctgagaagg 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no388_k08.g1 MSMg01no388_k08.g1 CHROMAT_FILE:
MSMg01no388_k08.g1 PHD_FILE: MSMg01no388_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:01 2005
         (491 letters)



>mm_chr9_43737732_43738622
          Length = 891

 Score =  926 bits (479), Expect = 0.0
 Identities = 479/479 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgggttcctttcctcccctgtagctgggatcataggcacactgcagtgcctagctaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctgggttcctttcctcccctgtagctgggatcataggcacactgcagtgcctagctaatc 620

                                                                       
Query: 61  ctgcctagtatgtaggttgtgcacactacttgatttctatgttcagacatctcccctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctgcctagtatgtaggttgtgcacactacttgatttctatgttcagacatctcccctttg 560

                                                                       
Query: 121 ctgggtctcttactgtaagggtcaacccactcccctcctccctcttgtctccctctgccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctgggtctcttactgtaagggtcaacccactcccctcctccctcttgtctccctctgccc 500

                                                                       
Query: 181 tgatcttgctggagaatttttaaagggacagctctgtcagcaggattgagagtagaggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgatcttgctggagaatttttaaagggacagctctgtcagcaggattgagagtagaggga 440

                                                                       
Query: 241 acccaggagccacaaacacctgtaaaaccaatttaaaaatcagtctagccaaccagcccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 acccaggagccacaaacacctgtaaaaccaatttaaaaatcagtctagccaaccagcccc 380

                                                                       
Query: 301 caaaggagccaaagagaactacagagtaactcaaaagcagacactaatggaggagaaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 caaaggagccaaagagaactacagagtaactcaaaagcagacactaatggaggagaaaag 320

                                                                       
Query: 361 aaatgtagttacatattcatcaggctttaaatattcatgaggactgtaaagcagattaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aaatgtagttacatattcatcaggctttaaatattcatgaggactgtaaagcagattaat 260

                                                                      
Query: 421 tttcatgcctcatttctcccatggttctcgctgcccatattttactgcagcagcagcag 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tttcatgcctcatttctcccatggttctcgctgcccatattttactgcagcagcagcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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