BAC Information

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BAC

Clone NameMSMg01-389A20
Chromosome9 (Build37)
Map Location 65,916,869 - 65,917,335
singlet/doubletsinglet
Overlap geneSnx22
Upstream geneDpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib
Downstream geneSnx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389A20.T7 (MSMg01no389_a20.b1)MSMg01-389A20.TJ (MSMg01no389_a20.g1)
ACCAG491399AG491400
length797754
length of high quality
(start - end)
444 (53 - 496)467 (83 - 549)
definitionCHROMAT_FILE: MSMg01no389_a20.b1 PHD_FILE: MSMg01no389_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:31 2005CHROMAT_FILE: MSMg01no389_a20.g1 PHD_FILE: MSMg01no389_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCTTTTAGATTTCTAAGTATCAAAACCAAGACACATGCTATAA
AGGGTGTGTGGAGCTCAGAGGACAACTTTCAGGAGTCAGTTCTCTTTCCA
CCTCTACACGGGTCTCAGGGACTGAACCCAAGGTGTTCAGAGTGAAATGA
CATGCAAGCACACTACCAGAGGAGCCATTCACTGCTCTCACACTTAAGTT
TCCTTCCTTCCTTTCTTTTTTTTTTTTAAGATTTATTTATTTTATGTATA
TGAGTACGCTGTTGCTGTCTTCAGACACACAAGAGGACATCAGATTCCAT
TATGGATGGTTGTGAGCCACGATGTGGTTACTGGGAATTGAACTCAGGAC
CTCTGGAAGAGCAGTCAATGTTCTTAACCGCTGAGCCAACCCCCCTGTCC
CGTTTTTTTTAAGACAGGATCTCATTATTTAGTCTTGGCTGGCCTGGAGC
TCACTCTAGACCAGGCTGGCTTAGACCTCAGAGAGATCTACCTGCCTCAC
CCTCCTGAATGTTGGGGTTAAAGCTGAATACCACCCCCTCCTGACTTTTT
TTCAAGTCCTTCTTCCTAAAAGAAACGATTTTGTGAAATCTCCCGTCTGC
CCTGAATTCTCCGAACACCCCCCCTTCTTATCCCCCTTCCCCCCCCAGTA
TCCTGCCTTTTCACAAACATAGTGCCCCCGGTCCCATTCCTATCGGCCCC
TCGCGCATCCCTCCCCCCGTCTACCCCCCACTTCTTTTCTCTTCTCC
NNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGCTAGGACATTCGTC
GCAAAGGTTCGGGGTTACTTGGCTTTGCCAGCCCCTTGGACAATGGTTTG
GGCTCTTGAGGGGTCGCTTGGAGCAGAGGGGAGGGCCGGTTACCCTTTTC
TTTCAGGTGTGTCTGGGGTTCGGAAGGGGTTTCCCTGATGGTGGCACGCC
AAGTCGGCTTTGTGCCTTTCTAACACCAGAAATTGGGCGCGTCTCGCGGC
GCGGGTCCTACTGCATCCTTTGGACCCGCCGTCTGTACTCCTCCACCCGC
CAGGTGTTCCAAGTGGAGGTGCTGTACAGCGGACGCAGACACACCGTGCC
GCGGCGCTACAGCGAGTTCCACGCTCTACACAAGCGGGTGAGATGTCGCG
GACTACCCACCGATCTGGCTCCAGGCCAGGTCCCTCGGTGGCATGAGAAA
GAGCTCTGATCCCAGCTTCTGGTTGGTCACCCCCATTACTGTCCCAGCCC
CCAGGAGGGTGCAGATCATAGGCGACTCCCCCTGGGCTGCAGGGCCCCTC
GCGGGGAGGAAGCAATGGCTAGAGCCCAGCTTTAATGACCTTGTCCGGGT
GGGTCCTTTCCACTTTTTGGTTTGTACTTCTGGCCAACCACCCTTTGCGG
TGGATCCAGCCGACCTTATAGACATTTTAGTAGGCGGTTGCATACCCCCC
CCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_a20.g1 MSMg01no389_a20.g1 CHROMAT_FILE:
MSMg01no389_a20.g1 PHD_FILE: MSMg01no389_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:31 2005
         (467 letters)



>mm_chr9_65916669_65917535
          Length = 867

 Score =  880 bits (455), Expect = 0.0
 Identities = 464/467 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggctaggacattcgtcgcaaaggttcggggttacttggctttgccagccccttggaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 agggctaggacattcgtcgcaaaggttcggggttacttggctttgccagccccttggaca 608

                                                                       
Query: 61  atggtttgggctcttgaggggtcgcttggagcagaggggagggccggttacccttttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 atggtttgggctcttgaggggtcgcttggagcagaggggagggccggttacccttttctt 548

                                                                       
Query: 121 tcaggtgtgtctggggttcggaaggggtttccctgatggtggcacgccaagtcggctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tcaggtgtgtctggggttcggaaggggtttccctgatggtggcacgccaagtcggctttg 488

                                                                       
Query: 181 tgcctttctaacaccagaaattgggcgcgtctcgcggcgcgggtcctactgcatcctttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tgcctttctaacaccagaaattgggcgcgtctcgcggcgcgggtcctactgcatcctttg 428

                                                                       
Query: 241 gacccgccgtctgtactcctccacccgccaggtgttccaagtggaggtgctgtacagcgg 300
           ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 427 gacccgccgtctgcactcctccgcccgccaggtgttccaagtggaggtgctgtacagcgg 368

                                                                       
Query: 301 acgcagacacaccgtgccgcggcgctacagcgagttccacgctctacacaagcgggtgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 acgcagacacaccgtgccgcggcgctacagcgagttccacgctctacacaagcgggtgag 308

                                                                       
Query: 361 atgtcgcggactacccaccgatctggctccaggccaggtccctcggtggcatgagaaaga 420
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 307 atgtcgcggactacccaccgatttggctccaggccaggtccctcggtggcatgagaaaga 248

                                                          
Query: 421 gctctgatcccagcttctggttggtcacccccattactgtcccagcc 467
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gctctgatcccagcttctggttggtcacccccattactgtcccagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)