BAC Information

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BAC

Clone NameMSMg01-389I16
Chromosome9 (Build37)
Map Location 30,506,158 - 30,506,474
singlet/doubletsinglet
Overlap genenone
Upstream geneHnt, Snx19, LOC666478
Downstream geneAdamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389I16.T7 (MSMg01no389_i16.b1)MSMg01-389I16.TJ (MSMg01no389_i16.g1)
ACCAG491772AG491773
length807734
length of high quality
(start - end)
40 (74 - 113)317 (335 - 651)
definitionCHROMAT_FILE: MSMg01no389_i16.b1 PHD_FILE: MSMg01no389_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:11 2005CHROMAT_FILE: MSMg01no389_i16.g1 PHD_FILE: MSMg01no389_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCTATATTTGNGGCGCTAAACGACTCCTATTTCCAGAGCACCGCGGAA
TTCTTTGTTTTTCCCCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGCCCCCT
ATCTGATTTACGACAGGTAAAGATCCTTTCCCAATCTGTTGGCGGTCTCT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCACAAACTTTGGAGTTTCATT
ATGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGCTCT
GTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCTCCACTT
TCTCCTCTATACTTCTCACTGCCTCTGGCTTTATGCGCAGTTCCTTGATC
CCCTTACATCTGACCTTATCACCTGGAGATCACTACGGATCGATTCCCCT
TCTTCCTACCCATCACTACCTCTCTGCGCTCCCCCACTCTTGCTGACTAT
GCTGTTCCCTCCCCTCCTGTCCGCCCCTCCCCTCCCCCTGCTCCTTCACC
CTCTCCCTTCCCCCTTCTTCCCTTTCTCCCCCTTCTCCTCTCACTTCTCC
CCTCCCTCGCCTCTCCCCCGCTTCGTTCCTCCCTCTCCACTCTTCCTCCT
TTTTCCTCTCTCCCCCTCCCCTCTCTTTCCCCCCTTCCCCTCCCTCTCTC
TCCCCCTTGTTCCTCCCCTTCCTTCCTCCCCTTCCCATTCCCTTTTCCTC
CCCTCCCCTTTTCTCTCCCCCCCCTTTTCTCTCACCCCTTCCCTTCCCCC
TCCTCCN
NNNNCCCTATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCGAAAACCCAATGAATACTCAATGAATAAC
CAAAGATATCTATGCAAAAATAATGTTAATTCGCATAATGTATATGAATT
AGAGGATGAAAACTGTTATTTCTAGTAGAAAATACTGGAGAAAAATCTTT
ATGATCATGTATTTTGTGTGTCCCTTGGCTGTGATGCAAAAGGCATGACC
TATCTATTTTTAAAAGGCGCATTGGGCTCCATCCAAAACAAGAGCTTTCA
TTTTTTTGGAAGGCACTGTTGAATATAATACTATACATGGCACAGACAAG
TGAACAATTACAAAGCCCTATTTCATTGGCTAGGAAGTCCTGTCCAACCA
TGCCATCACATGTAATTGTTAACACATAGACTTATGGTAAACTGGAAAGG
TGAAGCTTAGGCATCATGTGCTGTGATTCTGTGGACAAGACAGTGGTAGA
CACTAAGTAGAGTAGGCTGGCAGCTAAGAGATGTCATCCCTATAGGAAGG
TGACCAGGTTTGATCCTGCCCGCAGTGGTATAGTTAGGGCAGAATAGTCT
CTGTCCTCAAACTCTGGACCCATGAAGATCAAGAAGTCAGAGAGGGGATT
CATGCTCTGTCTTTTTTTATATGNCCAGACTACAGAGAATACTGCCCAGA
CACCACTATGGGTGGAGTCGTCTGCAAAGTTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_i16.g1 MSMg01no389_i16.g1 CHROMAT_FILE:
MSMg01no389_i16.g1 PHD_FILE: MSMg01no389_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:11 2005
         (317 letters)



>mm_chr9_30505958_30506674
          Length = 717

 Score =  569 bits (294), Expect = e-166
 Identities = 312/318 (98%), Gaps = 2/318 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatggcacagacaagtgaacaattacaaagccct-atttcattggctaggaagtcctgt 59
           |||||||||||||||||||||| |||||||||||  ||| ||||||||||||||||||||
Sbjct: 201 acatggcacagacaagtgaacagttacaaagcccacatt-cattggctaggaagtcctgt 259

                                                                       
Query: 60  ccaaccatgccatcacatgtaattgttaacacatagacttatggtaaactggaaaggtga 119
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccaaccatgccatcacatttaattgttaacacatagacttatggtaaactggaaaggtga 319

                                                                       
Query: 120 agcttaggcatcatgtgctgtgattctgtggacaagacagtggtagacactaagtagagt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agcttaggcatcatgtgctgtgattctgtggacaagacagtggtagacactaagtagagt 379

                                                                       
Query: 180 aggctggcagctaagagatgtcatccctataggaaggtgaccaggtttgatcctgcccgc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 380 aggctggcagctaagagatgtcatccctataggaaggtgaccaggtttgatcctgcctgc 439

                                                                       
Query: 240 agtggtatagttagggcagaatagtctctgtcctcaaactctggacccatgaagatcaag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agtggtatagttagggcagaatagtctctgtcctcaaactctggacccatgaagatcaag 499

                             
Query: 300 aagtcagagaggggattc 317
           ||||||||||||||||||
Sbjct: 500 aagtcagagaggggattc 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)