Query= MSMg01no390_h08.b1 MSMg01no390_h08.b1 CHROMAT_FILE:
MSMg01no390_h08.b1 PHD_FILE: MSMg01no390_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:23 2005
(505 letters)
>mm_chr9_23211839_23212742
Length = 904
Score = 946 bits (489), Expect = 0.0
Identities = 501/505 (99%), Gaps = 1/505 (0%)
Strand = Plus / Plus
Query: 1 tttaagtgatttgcctgtggctcttaaaactaggaaactcctgtggtctgcaaccgcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaagtgatttgcctgtggctcttaaaactaggaaactcctgtggtctgcaaccgcaga 260
Query: 61 gaggttatttttactctttaattgccaccactttagttcccttagctctcattaaatgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggttatttttactctttaattgccaccactttagttcccttagctctcattaaatgtg 320
Query: 121 atctttttattttaatttgatctttggacataaaagatgaatttctataaagacagccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctttttattttaatttgatctttggacataaaagatgaatttctataaagacagccca 380
Query: 181 aagtaggatggaaaaagactgtccctttcatcacagatccccaagcatggctgtatctgc 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 aagtaggatggaaaaagactgtccctgtcatcacagatccccaagcatggctgtatctgc 440
Query: 241 caagccatttgtttctagtcatatgctcggctccttcagccattttcctgttataatttg 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagccatttggctctagtcatatgctcggctccttcagccattttcctgttataatttg 500
Query: 301 aatcctctgggttctcttatttttcccttctgttctgcccccccgagattggcttcaccc 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 aatcctctgggttctcttatttttcccttctgttctgcccccc-gagattggcttcaccc 559
Query: 361 ctttcctaaggagtcctagttggagattatggatgagttaaccacctggatggcccatat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctttcctaaggagtcctagttggagattatggatgagttaaccacctggatggcccatat 619
Query: 421 tttatttgcatttgtaaagcctaggggggacttgggagagcaaagcaattaagagtatta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tttatttgcatttgtaaagcctaggggggacttgggagagcaaagcaattaagagtatta 679
Query: 481 gcattgtgcactcctagctctcaat 505
|||||||||||||||||||||||||
Sbjct: 680 gcattgtgcactcctagctctcaat 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 904
Length adjustment: 10
Effective length of query: 495
Effective length of database: 894
Effective search space: 442530
Effective search space used: 442530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no390_h08.g1 MSMg01no390_h08.g1 CHROMAT_FILE:
MSMg01no390_h08.g1 PHD_FILE: MSMg01no390_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:23 2005
(226 letters)
>mm_chr9_23350563_23351189
Length = 627
Score = 298 bits (154), Expect = 2e-85
Identities = 184/198 (92%), Gaps = 9/198 (4%)
Strand = Plus / Minus
Query: 1 aacaggtaagaacactccaattagtttaatttcaaatatgagt-aatgaaaaagggaaag 59
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 310 aacaggtaagaacactccaattagtttaatttcaaatatgagtaaatgaaaaagggaaag 251
Query: 60 atggtaaaagagaagaggaagagaagaagaaaggagaagttaactatcatttaacacaca 119
|||||||||||||||||||||||| |||||||||||||||||||||||| || |||
Sbjct: 250 gtggtaaaagagaagaggaagagaaaaagaaaggagaagttaactatcatgta----aca 195
Query: 120 cacatatgtgtgtgtatgtgtgtgtctatatatatatatatatatatatatatatgtgta 179
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 194 cacatatgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatat----a 139
Query: 180 tatatatatatatatata 197
||||||||||||||||||
Sbjct: 138 tatatatatatatatata 121
Score = 116 bits (60), Expect = 1e-30
Identities = 66/70 (94%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 156 tatatatatatatatatatgtgtatatatatatatatatatatatatatatatacacaca 215
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tatatatatatatatata----tatatatatatatatatatatatatatatatacacaca 176
Query: 216 cacacacaca 225
||||||||||
Sbjct: 177 cacacacaca 186
Score = 114 bits (59), Expect = 4e-30
Identities = 68/73 (93%), Gaps = 4/73 (5%)
Strand = Plus / Plus
Query: 154 tatatatatatatatatatatgtgtatatatatatatatatatatatatatatatacaca 213
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 121 tatatatatatatatatata----tatatatatatatatatatatatatatatacacaca 176
Query: 214 cacacacacacat 226
|||||||||||||
Sbjct: 177 cacacacacacat 189
Score = 70.3 bits (36), Expect = 9e-17
Identities = 42/46 (91%), Gaps = 4/46 (8%)
Strand = Plus / Plus
Query: 146 tatatatatatatatatatatatatatatgtgtatatatatatata 191
||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 129 tatatatatatatatatatatatatatat----atatatatatata 170
Score = 68.4 bits (35), Expect = 3e-16
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 175 gtgtatatatatatatatatatatatatatatata 209
|||||||||||||||||||||||||||||||||||
Sbjct: 118 gtgtatatatatatatatatatatatatatatata 152
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 105
Number of extensions: 53
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 10
Length of query: 226
Length of database: 627
Length adjustment: 9
Effective length of query: 217
Effective length of database: 618
Effective search space: 134106
Effective search space used: 134106
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
