Query= MSMg01no390_i19.b1 MSMg01no390_i19.b1 CHROMAT_FILE:
MSMg01no390_i19.b1 PHD_FILE: MSMg01no390_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:30 2005
(484 letters)
>mm_chr9_14544976_14545859
Length = 884
Score = 580 bits (300), Expect = e-170
Identities = 326/336 (97%), Gaps = 5/336 (1%)
Strand = Plus / Minus
Query: 150 aaaaaaaataaatatttttatatgtgggtctgtgtgtgcaccgggagcacacaggagtca 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 aaaaaaaataaatatttttatatgtgggtctgtgtgtgcaccgggagcacacaggagtca 823
Query: 210 aggatgctagaagaaggtgccaggtcctctgaagctgtatttcttcacagttgtgggtca 269
||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct: 822 aggatgctagaagaaggtgccaggtcctctgaagctggagttccacacagttgtgggtca 763
Query: 270 cttcgtgggtgctaggaggcaaaccctggtcctctgaaagagcaacaagaatatactaac 329
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 762 cttcgtgggtgctaggaggcaaaccctggtcctctgaaaga---acaagaatatactaac 706
Query: 330 cattaaaccctctccagccccaatctaatttctttaagatttattcgaattgttacatcc 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 cattaaaccctctccagccccaatctaatttctttaagatttattcgaattgttacatcc 646
Query: 390 attttgggtcattccaaacgtttgtgtaatggcctgtctactaacctcccccc-tccccc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 645 attttgggtcattccaaacgtttgtgtaatggcctgtctactaacctccccccctccccc 586
Query: 449 cgtttcacctcccccccttctcaggatacaccctaa 484
||||||||||| |||| |||||||||||||||||||
Sbjct: 585 cgtttcacctcacccc-ttctcaggatacaccctaa 551
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no390_i19.g1 MSMg01no390_i19.g1 CHROMAT_FILE:
MSMg01no390_i19.g1 PHD_FILE: MSMg01no390_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:30 2005
(468 letters)
>mm_chr9_14393013_14393880
Length = 868
Score = 853 bits (441), Expect = 0.0
Identities = 462/469 (98%), Gaps = 2/469 (0%)
Strand = Plus / Plus
Query: 1 attggtgccttcattcccattagcagcacaagctacacaagccaagtcaccacagagtga 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 attggtgccttcattcccattagcagcacaagctacccaagccaagtcaccacagagtga 260
Query: 61 gtcagaatgaataacaaacgtttgctttgggggtagagggagtcaccgtcctccacaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcagaatgaataacaaacgtttgctttgggggtagagggagtcaccgtcctccacaaga 320
Query: 121 acagcccaagtctcatcttgtcctcacggtgacccactttcaattccagatgaagatg-a 179
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 321 acagctcaagtctcatcttgtcctcacggtgacccactttcaattccagatgaaga-gca 379
Query: 180 agcaagctggagcagaggaagaccagaagcacatccttggagctgccccagggccagctc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agcaagctggagcagaggaagaccagaagcacatccttggagctgccccagggccagctc 439
Query: 240 ttgtgttcgtatcactcctcctcatgaccacttgagctcactcacagaaggggccaggat 299
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttgtgttcgtagcactcctcctcatgaccacttgagctcactcacagaaggggccaggat 499
Query: 300 gctctaggtcagctatacttgggccagtggctgctctcaccagtttacacaagttaaagg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gctctaggtcagctatacttgggccagtggctgctctcaccagtttacacaagttaaagg 559
Query: 360 ggataacatcaactatcagaacaggcagagagcgctgagcgactgggagtcagaccctca 419
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 560 ggataacatcaactatcagaacaggcaaagagctctgagcgactgggagtcagaccctca 619
Query: 420 ctctcctcccaagaacttgaatgtatttcatatccttcaaacttgtctc 468
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctctcctcccaagaacttgaatgtatttcatatccttcaaacttgtctc 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
