BAC Information

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BAC

Clone NameMSMg01-390P08
Chromosome9 (Build37)
Map Location 86,720,462 - 86,721,000
singlet/doubletsinglet
Overlap geneSnap91
Upstream gene9330154J02Rik, Tpbg, 2610018I03Rik, Pgm3, Rwdd2, Mod1, Prss35
Downstream geneC030002E08Rik, Cyb5r4, LOC666777, LOC244958, LOC100039510, 4922501C03Rik, LOC671706, Tbx18, LOC671731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390P08.T7 (MSMg01no390_p08.b1)MSMg01-390P08.TJ (MSMg01no390_p08.g1)
ACCAG492846AG492847
length776736
length of high quality
(start - end)
185 (137 - 321)535 (78 - 612)
definitionCHROMAT_FILE: MSMg01no390_p08.b1 PHD_FILE: MSMg01no390_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:01 2005CHROMAT_FILE: MSMg01no390_p08.g1 PHD_FILE: MSMg01no390_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCXXXXXXXXXXXXXXXXXXXXGAATACTAAATGCACACCACCGCGG
AATTCTTTCCCTTGACATCCACCGCTAACACCGACCCTGTGACCAAGAAC
CCTGGATACAATTTCTAATAACCTAGAATCTACAAAACATCTGAAGAAGC
TGCTGATTTTCGATCATTGCCTCACATACAATGTATGTGTACATGGGCCA
GACAGTGCCTCTAAACAACATTTACTTTATGAGTCCCAGATTAAATAACA
TTTTCCTTGATAGAGGAATTACAAAAGCCATCTGGGTTCTTCTCTCTGCC
ATCTGTTAATACTGTGCCATCTTTTCCAGGCCTTGCCATGTTGCTCTTGT
GCTGATCTTGGTCTGAACTTGACTTGAGAAAAAAGATCACTCAAAACTCT
CTGAAAGTATTGTTAAGCATTTCTATAGGATGCAGCAATCCTACATGTGA
GTCTTCCCAATGCCATTCCTCTAGGCATATAACTTTTGTTTTTTTGCTTT
TTTTTTCTCTTCTCTGCTTCCCAGACAGGGCCCCCCCTGCGCACCCCCTG
GCCTGCCCTGGAACCCACCCCGGCACACCTCGCCCGCCCCCCAACCCCTT
AAACCTCGCCCCGTCCTCTGGCCCCCCCCCCCCGTCGGCGACTACACTGC
AGCCCCCCCTCCATCCCCTCCCCTTCCCTCCACCCCACATCCCTCCCAAC
CGGCCCCCATTCCTTCACCCCTTCCCTAAAAACCTCCTACCCTTCCTTCC
ACCGGGCCATCCGCCCTCTTCCCTCN
NAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTAATTTCTACTCATATAAG
TTGATGCTCATTAGATGGGTCATAAATTACCTATCAAGTATTAGAGCATG
TTTCTGAAAGATAAAGTGGGGGCTCTTATAGTGATTTGGCTCACCAAACC
CTTCATGGCTTTCTGCTGTGTGAACTTTCTCTCAACATTACTGAGACAGC
ATGACCCTGTTGCTCTCTTGTTATCCTTCCTACCAAGTCTAGAATTCAGT
CCCTAAGGTACTGTGTTTTAATTATTTTATGACAAGGATTGTTTGTTTTT
CATGTATATATATATATATGTATATATATATATATATATATATATACAAT
GCTTCCTCAGAGGGCTCGACAGTCATTTGTCAATTCATTCTGTCAGTAAT
TATCTGCTGACTCTGCAAATGGCAGCTTGGTAAAGGACAGTCTACAGAAG
AGATAGAGAAACCAACGAATAGCTTGGCTTCTGCTCTAGAAATGGGTTTC
TTTAAATTTGCATATGGTTAAAGTCATGCTCCGTCTATACTCTCTCACAT
GAAAATTCTTCGTGTCACTCAACTTATAATTTTGTTACCTCATAAGTGTT
TTTAATTTTCTTAAGAAAAAGGAAATATATAATTAGGAGAAGAGCTAATT
CCCTGGGGGGAATACTCATTACCTTCCTGTGACCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_p08.g1 MSMg01no390_p08.g1 CHROMAT_FILE:
MSMg01no390_p08.g1 PHD_FILE: MSMg01no390_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:01 2005
         (535 letters)



>mm_chr9_86720266_86721200
          Length = 935

 Score =  977 bits (505), Expect = 0.0
 Identities = 529/539 (98%), Gaps = 4/539 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttaatttctactcatataagttgatgctcattagatgggtcataaattacctatcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tttttaatttctactcatataagttgatgctcattagatgggtcataaattacctatcaa 256

                                                                       
Query: 61  gtattagagcatgtttctgaaagataaagtgggggctcttatagtgatttggctcaccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gtattagagcatgtttctgaaagataaagtgggggctcttatagtgatttggctcaccaa 316

                                                                       
Query: 121 acccttcatggctttctgctgtgtgaactttctctcaacattactgagacagcatgaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 acccttcatggctttctgctgtgtgaactttctctcaacattactgagacagcatgaccc 376

                                                                       
Query: 181 tgttgctctcttgttatccttcctaccaagtctagaattcagtccctaaggtactgtgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgttgctctcttgttatccttcctaccaagtctagaattcagtccctaaggtactgtgtt 436

                                                                       
Query: 241 ttaattattttatgacaaggattgtttgtttttcatgtatatatatat----atatgtat 296
           |||||||   |||||||||||||||||||||||||||||||| | |||    |||| |||
Sbjct: 437 ttaattacagtatgacaaggattgtttgtttttcatgtatatgtgtatgtgtatatatat 496

                                                                       
Query: 297 atatatatatatatatatatatacaatgcttcctcagagggctcgacagtcatttgtcaa 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atatatatatatatatatatatacaatgcttcctcagagggctcgacagtcatttgtcaa 556

                                                                       
Query: 357 ttcattctgtcagtaattatctgctgactctgcaaatggcagcttggtaaaggacagtct 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttcattctgtcagtaattatctgctgactctgcaaatggcagcttggtaaaggacagtct 616

                                                                       
Query: 417 acagaagagatagagaaaccaacgaatagcttggcttctgctctagaaatgggtttcttt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 acagaagagatagagaaaccaacgaatagcttggcttctgctctagaaatgggtttcttt 676

                                                                      
Query: 477 aaatttgcatatggttaaagtcatgctccgtctatactctctcacatgaaaattcttcg 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aaatttgcatatggttaaagtcatgctccgtctatactctctcacatgaaaattcttcg 735



 Score = 58.7 bits (30), Expect = 1e-12
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                             
Query: 288 tatatgtatatatatatatatatatatatataca 321
           ||||| ||||||||||||||||||||||||||||
Sbjct: 519 tatatatatatatatatatatatatatatataca 486



 Score = 54.9 bits (28), Expect = 1e-11
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 292 tgtatatatatatatatatatatatata 319
           ||||||||||||||||||||||||||||
Sbjct: 521 tgtatatatatatatatatatatatata 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)