BAC Information

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BAC

Clone NameMSMg01-391C05
Chromosome9 (Build37)
Map Location 58,314,473 - 58,314,575
singlet/doubletsinglet
Overlap genenone
Upstream geneScamp5, D9Wsu149, LOC620603, Rpp25, Cox5a, 2310046O06Rik, Mpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21
Downstream gene6030419C18Rik, Cd276, Nptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391C05.T7 (MSMg01no391_c05.b1)MSMg01-391C05.TJ (MSMg01no391_c05.g1)
ACCAG492983AG492984
length791810
length of high quality
(start - end)
---103 (130 - 232)
definitionCHROMAT_FILE: MSMg01no391_c05.b1 PHD_FILE: MSMg01no391_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:15 2005CHROMAT_FILE: MSMg01no391_c05.g1 PHD_FILE: MSMg01no391_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTGCGGCCGCTAAAGAACACCATATTCCCCAAATCCGCGGAATTCTTTT
TTTTTTTCACAGACTATTTATTTATTATATGTAAGTACACTGTAGCTGTC
TTCAGACACTCCAGAAGAGGGCATCAGATTTCATTACGGATGGTTGTGAG
CCACCATGTGGTTTGCTGGGATTTGAACTTGGGACCTTCGGAAGAGCAGT
CGGCACTCTTAACCACTGAGCCATCTTGTCCGCCCCCTCTTTTTTTTTTA
AAGAGTTATTTATTTTATTTATATGAGTACACTGTAGCTGTCTTCCGACA
CCCCCGAAGATTTTTTTGGATCCCATTACAGATGACCGTGAGCCACCATG
TGGTTGCTGGCAATTGAACTCAGGACCTCTGGAAGAGCAGTCAATGCTTT
CACCCCCCCCCCCCCTCTCTCTAGCCCTACTGTACTCTTCTTAATAGCTC
CCTTACCGCTACCTTCACTACTTGTTTATTTTCCCCCGGCCTTTCTTTCC
CCCCCCTCTCGCCACTTTTCTTGTTTGTTGAAACTTCTCTCCCTCCCCTT
AATTCTCCCGCTTTTACCCCCCACCTTCCCCTTTCTTTCCCCTCACCTCT
TCCTTGCTCCCTGCCGCTCTTTTTCCCTCCACTGCTCTTTCCCCCCCTAC
CGACTTCTCTTCCACCCTCTCCCCTCCTCTCGCCCCTCCTCCCCTATTTC
TGCCTCCCCCTCCCCTATTTTCTTCGCTTCCCTATATTTCCCCCCCCCCC
CCCTACTTCCCCCCTCCCTCCTCTTTCCCCCCTGTTTCTCC
NCCCCGATGATATGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTGAATGATGCTCAGGAGTCCTG
GAGGTCAAGACAGAATAGAGCAGTGAGCATAACAGAGTGACTTCCTAAGG
GCCTGAAGTGAATGGCGTATGACTGGAAAACATGGGTTCTTACCAGAGTC
CACTCTGTTACGAGGTACGTGTTGATTATGGATATGAGTGGGCAAGACAC
ACCTCTTTTTCTAATTCTGCCTCGAGCCACGCCCAGCCCTTGTCCCATTT
GCCTCACCCCCCCGACTCCTATTTCTTCTTTTGAGACCCACCCCCCCTAT
CCCGCTGCCTCTTTCTCCTTCCCTTCCTCTTCCTGTTTCCCCTCCCCCCC
CCTTCCCCCTTTTTTCCCCCCCTCACATTGCTCTTTCCCTTCCTCCCCTT
TTCTTTCCCCTCTTCCCCCCTCCCCCTTCCCCTCCCCCTTTTTTTTCCCC
CCTTCCCCCTCCTCTCCTTCCTCCTCCTTTCTTTTACCCCTCTTTCCCCT
TTCCCCTTTTCTCCTTCCCCTTCCCCCTCCTTTCTTCCCTTCCCTTCGTC
CCTTTTACCCCCCGCCTCTTCCCTTCTTTCTCCCTTCCTCTTCCCTTTCT
TTTCCCTCCTCCCCACCCCCCCCCCCCTTCTCTTTCCCCTTCCCTCCTTT
TCTCTCCCCCCTCTCCCCCCCCCTTCCTTTTCCTCCTCCTCCTTCTTTTC
TTCCTCTCCCCACCCCCCCCCTCTCCTCCTTCTCTCACCCATTTATCCCT
CTTCTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_c05.g1 MSMg01no391_c05.g1 CHROMAT_FILE:
MSMg01no391_c05.g1 PHD_FILE: MSMg01no391_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:15 2005
         (103 letters)



>mm_chr9_58314273_58314775
          Length = 503

 Score =  192 bits (99), Expect = 7e-54
 Identities = 102/103 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taacagagtgacttcctaagggcctgaagtgaatggcgtatgactggaaaacatgggttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 taacagagtgacttcctaagggcctgaagtgaatggcgtatgactggaaaacatgggttc 244

                                                      
Query: 61  ttaccagagtccactctgttacgaggtacgtgttgattatgga 103
           ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 243 ttaccagagtccactctgttaggaggtacgtgttgattatgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 103
Length of database: 503
Length adjustment: 8
Effective length of query: 95
Effective length of database: 495
Effective search space:    47025
Effective search space used:    47025
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)