BAC Information

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BAC

Clone NameMSMg01-391K17
Chromosome9 (Build37)
Map Location 31,149,364 - 31,149,841
singlet/doubletsinglet
Overlap genePrdm10
Upstream geneSnx19, LOC666478, Adamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539
Downstream geneNfrkb, Tmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391K17.T7 (MSMg01no391_k17.b1)MSMg01-391K17.TJ (MSMg01no391_k17.g1)
ACCAG493387AG493388
length760782
length of high quality
(start - end)
249 (65 - 313)478 (72 - 549)
definitionCHROMAT_FILE: MSMg01no391_k17.b1 PHD_FILE: MSMg01no391_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:58 2005CHROMAT_FILE: MSMg01no391_k17.g1 PHD_FILE: MSMg01no391_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCGGAATTCTCAG
CAGTTCCCTCTTAAATAGCTGGGAAGCACTTAAAGAACCAGGAGAATGAA
TCTAAATATGCAGCAGTAGGGGCTAGGAGGGAAGAGGAACCTCTAGAAAG
TCTCAGAAACCTAGGATGTGAGAGGCTATCAGGACTTAATGGAGATGACA
TTAGGCAAAGTGCCCAACAGTGGGGAGATGGAACTGGAAGAGACCACCTC
CAGTAGATAGACACAGCCCTCAGTTGAGGCAGGGGCCACCCACTCATCTT
CAAATTTTTTGACTCTGTATTTGTTCCTTTTTAAAGGAAATGCAGAAACA
AAAATGGAGCAGAAACTGATTGAAAGGCCACCCAGTGACCGGCCCAGCTT
GGGATCCATCCCATGAGCACACATCAAATCCTGATACTATTACTGAGGCC
ATATTCTACACACAGACAGGAGCCTAGCATGGCTGTCCTCTAAGAGGCTC
TACCAGCAGCTGACTGAGACAAATGCAGATACAGCCACCCATTGGATTGA
AGTTGGGAACCTATATGCAAGAGTTAGCGCAAAGACTGAAGGACCTGAAG
GGCATTGATTTGCCCCCCCCCAAAAAGGAACACGGGGGCAACCCCCCCAG
ACCTCTCTTAGATTCCCGAAAATAATTCCCCAACCCCAAGCAGATTTCCC
GAGCGGCGTTTGGGTCCCCCCCCCCCCCTGCGCCCTCCAAACTCTCCCCC
CTCTCTTTCC
ATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGAGTTTCAAAATAGGGACTTAGGTTTAT
TTAATTACAATAATTATTTCTATTTGACTTAATTTTTTCTTTCTTTTTCT
TTTTTCTCTTTGGTGTTGTAGATTGAACCAAATGCCCTACAAGGGCTAAG
CAGGGACTCTTTCCCCCAGGCTATACTTTCCAAACTAAAATATTTGCATT
TCTAGCCATTCTAATCTTTGTGTAATCATAGCTTGCAAGGAAGTTATGGG
TAACTAAATTAGTTATTTGTCGTTTCCAGGAGAAACTAGCAAGCATTCCT
GAGAAGGGCTCTGTCTCAGTGCATGGGGCGCGTTCAGGGGGCGCCTGGCA
CAGCTTAGGCACACTTGTGCACTGAGGAGCTGGCCAGTGTGTTTCTGTGA
GGTCTGTGTCTCCACGTTTGACCTCGAGTCTGTAGAGGTTCTCCGACTTC
CCCAACTTCTGTTTCCAACATGTTCCTTTTACTCTTTTGTGGGCTGTCTT
TGAGCCTGAGCTAGGAACTGCTCAGAGTGTTTATGAAAAGCAATATGCGT
TTTGTGCAATGCTTGTATCTCTTTTACGGCAGCTAGCGTTAATATCATTC
GTTGACTCTCTGACTCATACATTTTACCTCTACTTCTTTACACCCCCCCC
TCCTCCCTTATTTTCCCCCCTACCCCTCTCATTCCTCCTTACCCCCCTTT
TAAGGGATCGGCTCCCTCACCCCTTTCTGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_k17.g1 MSMg01no391_k17.g1 CHROMAT_FILE:
MSMg01no391_k17.g1 PHD_FILE: MSMg01no391_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:58 2005
         (478 letters)



>mm_chr9_31149164_31150041
          Length = 878

 Score =  878 bits (454), Expect = 0.0
 Identities = 472/478 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagtttcaaaatagggacttaggtttatttaattacaataattatttctatttgactta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagtttcaaaatagggacttaggtttatttaattacaataattatttctatttgactta 260

                                                                       
Query: 61  attttttctttctttttcttttttctctttggtgttgtagattgaaccaaatgccctaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttttctttctttttcttttttctctttggtgttgtagattgaaccaaatgccctaca 320

                                                                       
Query: 121 agggctaagcagggactctttcccccaggctatactttccaaactaaaatatttgcattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggctaagcagggactctttcccccaggctatactttccaaactaaaatatttgcattt 380

                                                                       
Query: 181 ctagccattctaatctttgtgtaatcatagcttgcaaggaagttatgggtaactaaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagccattctaatctttgtgtaatcatagcttgcaaggaagttatgggtaactaaatta 440

                                                                       
Query: 241 gttatttgtcgtttccaggagaaactagcaagcattcctgagaagggctctgtctcagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttatttgtcgtttccaggagaaactagcaagcattcctgagaagggctctgtctcagtg 500

                                                                       
Query: 301 catggggcgcgttcagggggcgcctggcacagcttaggcacacttgtgcactgaggagct 360
           ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 catggggcgcgttcaggggacgcctggcacagcttaggcagacttgtgcactgaggagct 560

                                                                       
Query: 361 ggccagtgtgtttctgtgaggtctgtgtctccacgtttgacctcgagtctgtagaggttc 420
           ||||||||||||||||||||||||||||||||| ||| |||||| |||||| ||||||||
Sbjct: 561 ggccagtgtgtttctgtgaggtctgtgtctccatgttcgacctccagtctgcagaggttc 620

                                                                     
Query: 421 tccgacttccccaacttctgtttccaacatgttccttttactcttttgtgggctgtct 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccgacttccccaacttctgtttccaacatgttccttttactcttttgtgggctgtct 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)