BAC Information

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BAC

Clone NameMSMg01-392A07
Chromosome9 (Build37)
Map Location 24,208,915 - 24,209,329
singlet/doubletsinglet
Overlap genenone
Upstream geneBmper, LOC100040866, LOC100040878, LOC100040893, Npsr1
Downstream geneDpy19l1, Cypt4, Tbx20, LOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392A07.T7 (MSMg01no392_a07.b1)MSMg01-392A07.TJ (MSMg01no392_a07.g1)
ACCAG493653AG493654
length765731
length of high quality
(start - end)
522 (75 - 596)415 (77 - 491)
definitionCHROMAT_FILE: MSMg01no392_a07.b1 PHD_FILE: MSMg01no392_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:25 2005CHROMAT_FILE: MSMg01no392_a07.g1 PHD_FILE: MSMg01no392_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGCCCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTAATTTTTCATGGGAACTTTTAAAGAGGGTGGAGCAAT
GGAGTACTACTCAGCTATTAAAAAGAATGAATTTAAGAAATTCCTAGGCA
AATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAA
AGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAA
CTTAGGATACCCAAGATATAAGATACAATTTGCTAAACGCATGAAACTCA
AGAAAAAGAAGACCAAAGTATGGACACTTTGCCCCTTCTTAGAATTGGGA
ACAAAACACCCATGGAGGGAGTTACAGAGACAAGGTTTGGAGCTGTGATG
AAAGGATGGACCATCTAGAGACTGCCATATCTGGGGATCCATCACATAAT
CAGCTTCCAAACGCTGACACCATTGCACACACTAGCAAGATTTTGCTGAA
AGGACCCAGATATAGCTGTCTCTTGTGAGACTAGGCCAGGGCCTAGCAAA
AACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCC
CATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCC
TATAGGTGGAACAACATTATGGACTACCCAGTACCCCGGAGCCCTTGACT
CTAGCTGCCAATGTATCAAAAGAGGGCCTAATCCGGCCCTCACTGCGAAA
GAGAAGCCCCTTTGG
CCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTACGGGTGTGCCCCCCCCCCAA
TTTTGGGTTGTAGTTAATTCCAGATGTAGTGAAGTTGACAACTAAGAACA
ACCGCCACAGACCACCATGCCTGGTGTGCCAACATTTCAGAACCTGCTTT
CCATGCTTCATTTCGGGGTTCCCACCCTTTTTGAGGTCCCTGTCCAGTCA
AAATAGGTAAGGTATATCTCAAGTACATCGTTTGATTAACAACAATTGAT
GGGTTTGGGCCTTTTGATCAGTCAATGAATTACTTGGTGAACAAGCATGA
GGACTGTAGTTGGGTCCACAGCACCCAGGAAACAAAACTGGGAACCGTGG
GAAGGTCGAGACAAGAGGATGCCTGGCACTTGCTAGCCAGTCTAGACAAG
GAAACGGTTCTCAGTTAAACACCATGGCTCCCAAAATAAGACGAAGCACA
ATTTACGAAGATGCCTGACCTTGACTCCTGACCCCTGACCTCTACACATA
TCTGAAAACATGTATATACCAGCATGAACACGCACAAGCGTATACCAAGT
GACTGTTAGTTCTTACAGTATTTCTACTCATCATGCAACTCACCTGTGTT
TGTCTATTTACCACTTCCATACACCGCTGGCTCTTTTGCACCTGACCACC
CCCGACGAAACACGAACACCTCAACCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_a07.g1 MSMg01no392_a07.g1 CHROMAT_FILE:
MSMg01no392_a07.g1 PHD_FILE: MSMg01no392_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:25 2005
         (415 letters)



>mm_chr9_24208806_24209620
          Length = 815

 Score =  733 bits (379), Expect = 0.0
 Identities = 406/415 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctacgggtgtgccccccccccaattttgggttgtagttaattccagatgtagtgaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tctacgggtgtgccccccccccaattttgggttgtagttaattccagatgtagtgaagtt 465

                                                                       
Query: 61  gacaactaagaacaaccgccacagaccaccatgcctggtgtgccaacatttcagaacctg 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 464 gacaactaagaacaaccgccacagaccaccatgcctggtgtgctaacatttcagaacctg 405

                                                                       
Query: 121 ctttccatgcttcatttcggggttcccaccctttttgaggtccctgtccagtcaaaatag 180
           |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 404 ctttccatgcttcatttcggggttcccaccgtttttgaggtccctgcccagtcaaaatag 345

                                                                       
Query: 181 gtaaggtatatctcaagtacatcgtttgattaacaacaattgatgggtttgggccttttg 240
           ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 344 gtaaggtatatctcaagtacatcgttttattaacaaccattgatgggtttgggccttttg 285

                                                                       
Query: 241 atcagtcaatgaattacttggtgaacaagcatgaggactgtagttgggtccacagcaccc 300
           ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 284 atcagccaatgaattacttggtgaacaagcatgagaactgtagttgggtccacagcatcc 225

                                                                       
Query: 301 aggaaacaaaactgggaaccgtgggaaggtcgagacaagaggatgcctggcacttgctag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 aggaaacaaaactgggaaccgtgggaaggtcgagacaagaggatgcctggcacttgctag 165

                                                                  
Query: 361 ccagtctagacaaggaaacggttctcagttaaacaccatggctcccaaaataaga 415
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 164 ccagtctagacaaggaaacggttctcagttaaacaccatggctccaaaaataaga 110


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)