BAC Information

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BAC

Clone NameMSMg01-392H12
Chromosome9 (Build37)
Map Location 52,832,095 - 52,832,375
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876, AI593442, Gm1715
Downstream geneDdx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392H12.T7 (MSMg01no392_h12.b1)MSMg01-392H12.TJ (MSMg01no392_h12.g1)
ACCAG493996AG493997
length791775
length of high quality
(start - end)
444 (73 - 516)397 (75 - 471)
definitionCHROMAT_FILE: MSMg01no392_h12.b1 PHD_FILE: MSMg01no392_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:00 2005CHROMAT_FILE: MSMg01no392_h12.g1 PHD_FILE: MSMg01no392_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACAGAGGATCCGC
GGAATTCAAGGTTCTGTCAATGGGGTTCTTGGAAGCCTTGAAGATGGACA
TCATAGAGGAAGGGCTGCAATGGAATCCAGAGGAAAGATATGCGATGATG
GCCTGGGGAAGACTGGTCCACAGTAAAGCCTCATGAGGAGAAGTCACTGT
CACTGAACATGGTTAGAAAGAACGTGAAGCCAGACACCAATGTTTCATTC
ATAAGGACGTTGAGAAATGAGCATCAGCATGAAACAAAGAGCTAGACTAA
CTTTGTTTGAAGCTTGCTTCTCTGTACTAACTGGGAACTTGTCTGCCTCT
TAAGGCCTTGATGCCTTGTTTGGAAAATGGCAAAGCCCAGTCAAAGGCTA
GAATGAGAATTCTGTGACCTGGTGTATAAAATTAGTTAGTATATAATAGG
TGTTCAAAAATGATGTTTCCTATTAGAGGATCTATAACAGAATGTTGGTT
CTGAAGATCTGAGAGCAGAACACTGGCCATGAGTGGTCTGGTGGATGTTC
CAGCTGGATGCTTATAACCCCAGACCGAGAAAATACGCCGGCGTGTGGAT
TCTGCGGCAGGTTGCCCTTTGTAGCGCCTGCACCCCCCCCCAGTGGCATC
CTCTTTTCTATTTTTGGTAGCCCTTCCCCCTAATGCCCCCCTTGCACCAA
TGCCCGGCCATCGTCCTCGTTCCCCCACTCGCCCCCACGGCTCCTCCGCA
CCCCCTCTTTCTTCCTCCCTTTCTCCCCCTTTTCCCTCCCC
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTGATACAAGTCAGTATATTAGGTC
CCAGAATACGGTTCAGTAGCTATAGGATTTGCCACTGAGTCCGACAACCT
AAGTTTAATCCCCAGGATCCAAATACTAGAAGAAGAGAACTGGCTTCCTC
AGGTTGTCCTCCAGCCTCAGTGCTTGCCCTAGCACATACATGCAACACAC
ACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGTGAGACAGACTTATTGACAGACAGACAGACAGACAG
AGAAAGAGACAGAGACTGAGACAGACAGAGAGACAGAGAGAGAACTTTGT
AAACCTATCTTCTTCACAGNTACAATTTCATCAATGCCATTAAAATAAGC
TGAGTTAACATAACTGACAGCCATATCTAACAAGAATAAGTATTATGCTC
AGGTAAGGGATTCTCCCAAGGTAAAAAAAAGATATTTTTTTTCTGTCCAA
AAAGGCTGAGCTGGGATAGTTTTGTGGGGCCTCGCCCAAAGCTATAGGCT
CTTTTGAAAGAGCGGGCCCTTTTTTGTATGGGGGCCCCTTCCATTTGCTT
GGGCGCCTTTCTTTGGACCCATTTTCCGCCAATTGGTGGGTGTTCCATCC
CTCTTTTCCCCTCGTGTGTCTTTTCCCTCCCTTCCCCGTGTTCCAACCTT
ACCCAACCTCTCCTCATTCCGCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_h12.b1 MSMg01no392_h12.b1 CHROMAT_FILE:
MSMg01no392_h12.b1 PHD_FILE: MSMg01no392_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:00 2005
         (444 letters)



>mm_chr9_52831895_52832738
          Length = 844

 Score =  505 bits (261), Expect = e-147
 Identities = 276/281 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggttcttggaagccttgaagatggacatcatagaggaagggctgcaatggaatccagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gggttcttggaagccttgaagatggacatcatagaggaagggctgcaatggaatccagag 422

                                                                       
Query: 61  gaaagatatgcgatgatggcctggggaagactggtccacagtaaagcctcatgaggagaa 120
           |||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 421 gaaagatatgcgctgatggcctgcggaagactgttccacagtaaagcctcatgaggagaa 362

                                                                       
Query: 121 gtcactgtcactgaacatggttagaaagaacgtgaagccagacaccaatgtttcattcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 361 gtcactgtcactgaacatggttagaaagaacgtgaagccagacaccaatgtttcattcag 302

                                                                       
Query: 181 aaggacgttgagaaatgagcatcagcatgaaacaaagagctagactaactttgtttgaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 301 aaggacgttgagaaatgagcatcagcatgaaacaaagagctagactaactttgtttgaat 242

                                                    
Query: 241 cttgcttctctgtactaactgggaacttgtctgcctcttaa 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cttgcttctctgtactaactgggaacttgtctgcctcttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)