BAC Information

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BAC

Clone NameMSMg01-392I02
Chromosome9 (Build37)
Map Location 85,739,543 - 85,739,743
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666672, BC023892, Ibtk, 4933431K14Rik, EG434426, 9330154J02Rik, Tpbg
Downstream gene2610018I03Rik, Pgm3, Rwdd2, Mod1, Prss35, Snap91
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392I02.T7 (MSMg01no392_i02.b1)MSMg01-392I02.TJ (MSMg01no392_i02.g1)
ACCAG494024AG494025
length755793
length of high quality
(start - end)
51 (240 - 290)200 (68 - 267)
definitionCHROMAT_FILE: MSMg01no392_i02.b1 PHD_FILE: MSMg01no392_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:03 2005CHROMAT_FILE: MSMg01no392_i02.g1 PHD_FILE: MSMg01no392_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGGACTATTTCTCCGTCTCACAAGTGACAGTTCTCTGGCTG
TGTAAATAAGTGGTAGCAAAGACTGGAAAGCATCACCTACAACATGAGAG
ATTTAGGCTGAGGGGGAGCTAGGTAACTTCTGGTATTCTTCTATTACAAC
AGAATCAAAGAACATCCGTGTACACGTTGGGTGTGAGTATAAACTTTTCT
TTCTCTAGGAAAAATACTCATAAGCACCTGCTGGTCACACGAAACCCAGA
CCTTTAAGAGGCACAAGTATGACTGACATGGAAGTTTCTGGTAGGCATCC
TGTGACCCAGACTCACGTGGAGTTTTGCTGAGGCAAGACCAGTGGACAGA
CACCTGATGTTTGAACAGAACAGTATAAACGGGACTCAATGGACAGTGAC
TGCACGCTTGCATAGCTAGCTTTGCAATGGTTTCCTTGGTCTCGAGTCTT
TGCTGATCTTCAGCTTGCTTCCTTGTCGCTCTTACTGATTCATTCCTGCG
ATTCGGAGGAAGCCTGGCTGCTTCCGCTGGATCCCTGCCCCTGCTGCTGC
CCTGCCGTTGTCATCCTGACCCACTATCTCCGACCGCTGCCATTTTGACC
CCCCAGACTGTCCCCCCCTCTCAACACCATCTCCCTACGGCCCCCTTCCC
TTATTCTACTTTCCATCTCCCCCCCCCCCCCCTCTCCCCCCCCAACTGGC
CCCCC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTCCAGACTATTTATATGAAGGCACTGCTCCA
GGCTGATTCTCAGCTCTGCTAACTAATAACTCCAGTATTATTTGAATCCA
GACTATTCAATACCATTGCCCTTAATCCTCCTTTCAAAATACCAAAGTTG
AACACAACATGCTTCTTTTAACATTCTTTTATTGATTTTTTTATATGTAT
CCAGTTTGTTGGATCTCAATGCAGGTTATTTAAAAAACTAAACAAAACAA
AACACAGCCGATTTTTTTTTCAAAAAAAAAAACACCGAAAAATCTCACGT
CATGTTTCCTATACCCTGCAACCAATAAGTAGTGTAGTTTGTCAAAGAAG
CTATCTGATACTGCTATTTCTCTCTTTTTATTATGGCGAACACGCTTACG
CATCACCTGCCTCTGGATGCTCGCGTTTCCATGCTTCCACTACCTCCCTG
TTCACATTTCGCACCTCCCCTGCTCCTTCTTTTCTCCCCGTTATTACCTC
CCCCTTCCGTCCTTTCTCTTTTTTCCTTTTCCCCCTCTTTCTTGACTCCC
TTCTTCTTTTTTTTTCCCCTCTTACTACCTCTTCTCCCCCTTGTTTTTCT
TCTCCCCCCCCGCCGAGCTTTCCTCCTTTTTCCTACCCCTTATTTCTTTC
TCTCCCCCGCCTTTTTTCTCATATCCTAACCCCTCTTTATATTTTCACCC
ACTCTCTGCCCCCCCTTTCAACCCCCTTTCTTTTTCTCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_i02.g1 MSMg01no392_i02.g1 CHROMAT_FILE:
MSMg01no392_i02.g1 PHD_FILE: MSMg01no392_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:03 2005
         (200 letters)



>mm_chr9_85739343_85739943
          Length = 601

 Score =  335 bits (173), Expect = 1e-96
 Identities = 194/201 (96%), Gaps = 1/201 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctccagactatttatatgaaggcactgctccaggctgattctcagctctgctaactaat 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tctccagtctatttatatgaaggcactgctccaggctgattctcagctctgctaactaat 342

                                                                       
Query: 61  aactccagtattatttgaatccagactattcaataccattgcccttaatcctcctttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aactccagtattatttgaatccagactattcaataccattgcccttaatcctcctttcaa 282

                                                                       
Query: 121 aataccaaagttgaacacaacatgcttcttttaacattcttttattgattttttt-atat 179
           |||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| 
Sbjct: 281 aataccaaagttaaacacaacatgcttcttttaagattcttttattgattttttttataa 222

                                
Query: 180 gtatccagtttgttggatctc 200
             |||||||||||||||||||
Sbjct: 221 caatccagtttgttggatctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 601
Length adjustment: 8
Effective length of query: 192
Effective length of database: 593
Effective search space:   113856
Effective search space used:   113856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)