Query= MSMg01no393_j14.b1 MSMg01no393_j14.b1 CHROMAT_FILE:
MSMg01no393_j14.b1 PHD_FILE: MSMg01no393_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:36 2005
(564 letters)
>mm_chr9_117841398_117842360
Length = 963
Score = 1065 bits (551), Expect = 0.0
Identities = 557/559 (99%), Gaps = 1/559 (0%)
Strand = Plus / Plus
Query: 6 ggaattctgactttgttcctcacacttgcatggctagcaatctaactactgagccatctc 65
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattctgactttggtcctcacacttgcatggctagcaatctaactactgagccatctc 265
Query: 66 caaggctccataggttcatccatttctaatccaagtgacaacatatgttaattgtccagt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 caaggctccataggttcatccatttctaatccaagtgacaacatatgttaattgtccagt 325
Query: 126 atgattttaaaaaagaaaacactatgttaataaatgtcttttttgcatagctatgaagta 185
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 326 atgattttaaaaaagaaaacactatgttaataaatgtcttttt-gcatagctatgaagta 384
Query: 186 ataacagtgtttactactaaatttattatgttgagataaaataatgaccccaccaccacc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataacagtgtttactactaaatttattatgttgagataaaataatgaccccaccaccacc 444
Query: 246 taaaaaagggcctatgatgatgacagaattgtattctgcctaaataaaacagcagtttta 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaaaaagggcctatgatgatgacagaattgtattctgcctaaataaaacagcagtttta 504
Query: 306 cttgacacaaagtcttgctgaagcaaagatcagagaaaacagcacacatgtagcttgctg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttgacacaaagtcttgctgaagcaaagatcagagaaaacagcacacatgtagcttgctg 564
Query: 366 catggcatcagagacagaagcctgcccaaagccagcataacctggagggattgccacacc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catggcatcagagacagaagcctgcccaaagccagcataacctggagggattgccacacc 624
Query: 426 cttgccttgcacctgatcccagcagtctgacacaatacttcttcttctctaccagggcgg 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cttgccttgcacctgatcccagcagtctgacacaatacttcttcttctctaccagggcgg 684
Query: 486 atcgccacaagtcatacatctaaatgtacccaggcaggacataagaaagagaattttaaa 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atcgccacaagtcatacatctaaatgtacccaggcaggacataagaaagagaattttaaa 744
Query: 546 tccccataaagcactatta 564
|||||||||||||||||||
Sbjct: 745 tccccataaagcactatta 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 963
Length adjustment: 10
Effective length of query: 554
Effective length of database: 953
Effective search space: 527962
Effective search space used: 527962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no393_j14.g1 MSMg01no393_j14.g1 CHROMAT_FILE:
MSMg01no393_j14.g1 PHD_FILE: MSMg01no393_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:36 2005
(448 letters)
>mm_chr9_118078113_118078965
Length = 853
Score = 814 bits (421), Expect = 0.0
Identities = 443/453 (97%), Gaps = 5/453 (1%)
Strand = Plus / Minus
Query: 1 cacccaccaaattgtaaagcgagaactagaggagactgtattgacccagttgattttagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 653 cacccaccaaattgtaaagcgagaactagaggagactgtattgacccagttgattctagt 594
Query: 61 atgactagatcaagataaatgtgattggcgctgtgcctgtctggccctttcttaccccaa 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 593 atgactagatcaagataaatgtgattgacgctgtgcctgtctggccctttcttaccccaa 534
Query: 121 tcaaaacccatgtcgatgaaaagggtctgctttgatggtcccaaacgtgataggaagagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tcaaaacccatgtcgatgaaaagggtctgctttgatggtcccaaacgtgataggaagagc 474
Query: 181 cgctccctttagtcatttcctgtttgtcag-----tttttttttatctaggtgttaggtt 235
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 473 cgctccctttagtcatttcctgtttgtcagttttttttttttttatctaggtgttaggtt 414
Query: 236 taaatttggaacatgcgaggtacagtgaacttgtcttgggcagaagaagaaaaaaggaag 295
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 413 taaatttggaacatgcgaggtgcagtgaacttgtcttgggcagaagaagaaaaaaggaag 354
Query: 296 aaagaagcttaagttgcctatttttaaatggaatataatttaatctataaggcaaggtaa 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aaagaagcttaagttgcctatttttaaatggaatataatttaatctataaggcaaggtaa 294
Query: 356 cgtcttctagttgtgagagtgacggtgctatacagtttgcacagtaccagcaggtgcttg 415
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 293 catcttctagttgtgagagtgacgttgctatacagtttgcacagtaccagcaggtgcttg 234
Query: 416 tatgtaaagcatggctctgattgcttatgaatt 448
|||||||||||||||||||||||||||||||||
Sbjct: 233 tatgtaaagcatggctctgattgcttatgaatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 853
Length adjustment: 10
Effective length of query: 438
Effective length of database: 843
Effective search space: 369234
Effective search space used: 369234
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
