BAC Information

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BAC

Clone NameMSMg01-396F08
Chromosome9 (Build37)
Map Location 110,090,931 - 110,091,353
singlet/doubletsinglet
Overlap geneSmarcc1
Upstream geneFbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30
Downstream geneRn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396F08.T7 (MSMg01no396_f08.b1)MSMg01-396F08.TJ (MSMg01no396_f08.g1)
ACCAG496936AG496937
length762745
length of high quality
(start - end)
432 (36 - 467)423 (69 - 491)
definitionCHROMAT_FILE: MSMg01no396_f08.b1 PHD_FILE: MSMg01no396_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:26 2005CHROMAT_FILE: MSMg01no396_f08.g1 PHD_FILE: MSMg01no396_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTG
CCTGTCTCTGACTCTGCCTCCTGAGTGTTGGGATTAGAGTTGTGTGCCAC
CACCTCCTCACCCAGAGGTTTTTTTCCTTCTGTCTACATATTTATTATTA
ATATTTTATTGATTCCGTGTGGATTTCACATCACACACCTCAATCACATT
CATTTCTGTCCCTCTAGATCCGCCCTCCACCCTTACAACCTAACCACCCA
AAAGAAAACAGATAGACAAGCAAGCAAGAACTCTCACCATGGAATTTGAG
TGTGTCACAGTGTGTCATACAGCACACCCTTTTGCTCAAACGGTTTTACT
TGTAAATGTGCATTGCTGTGAATCACTGGTCTGGTTTGAGGCCTCTGGCT
TCCTCCATACTATCAATACTGGATCCTCACCAAGACTCCTCTCAGATATA
CTGCCATTGCCCTATGTCATGGAAATCTTGCAGTTTTGCATCGCCAAGAT
TGTTCTCTTAACAAGTTCCTAGCAGCCCAGATGGTTTATAAACTTGCTAT
GGGCCATTTCAAAGCCCTACATTTGTTTCTTAGGTCCAATTTGACTTGGT
TTTTTCACCTATATTCCCTGTATCCCCTGGTTTTTGTTATCCCTCTTTTC
CACTTTTTTTTCACTTTAATAGTTGTCCCATTTTTTCTCCTTTTTCCCCT
CCTCCCATGGCTTTCTCTTTCCTTCTTGTTCACCCCATCCCATCTTCCTT
TTCCTCCTTCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGATCCCCAGTAAACACAATCCCCGATGTGAT
AGCACCTTCTCGCAACAAGAAAGACAGGAGAATCCCCATGAAGGTAGTAG
CAGGTCCACTAGCCTGGAGGAGGCTACACAGAGGCACACAGTAAAAGGGA
CATTGCCAAAACCATGGTGTAAACTGACGGCCCACACCCAAGGTTGTTCT
CTTACCTTAAAAAATATACACATACATAATGCTCCTCATTCAAAAATAAG
CATAGTTTTAAAACTATGATAAAAGCAAAACAAGGAGAGTAAAGATATAA
TAACTGAGAAAGAGGGCTGGAGAAATGGCCCAGAGGTTAACAGCACTGAC
TGCTCTTCCAGAGGCCCTGAGTTCAATTCTCAGTATCACAACCACCTGTA
ATGGGATCTGATTCCCTCTTTTGCTGTGTCTGATGACAGCGACATTGTAC
TCCCATCATATAAGTAAATAAATCTTTAATAAAAAAATAAAAGTAATTGA
ATTTTAAGTCTTGATACCCGCTTGATGTTACCTTATGGTTAAACGTCGCA
GGACCACCAATATTTTTTTGGTTTGTTATAAATACCCCTTTGGGATTTGG
TTTATATGAACACTGGCCTTTACCATTAAGACTTTTTTTTATGTTCAAAT
GGGTGTACTCTTCTATATCGTGGTTTCTACCCTTTCCAATACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_f08.g1 MSMg01no396_f08.g1 CHROMAT_FILE:
MSMg01no396_f08.g1 PHD_FILE: MSMg01no396_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:26 2005
         (423 letters)



>mm_chr9_110090731_110091553
          Length = 823

 Score =  787 bits (407), Expect = 0.0
 Identities = 419/423 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatccccagtaaacacaatccccgatgtgatagcaccttctcgcaacaagaaagacagg 60
           |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 agatccccagtaaacagaatccccgatgtgatagcaccttctcgcatcaagaaagacagg 260

                                                                       
Query: 61  agaatccccatgaaggtagtagcaggtccactagcctggaggaggctacacagaggcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaatccccatgaaggtagtagcaggtccactagcctggaggaggctacacagaggcaca 320

                                                                       
Query: 121 cagtaaaagggacattgccaaaaccatggtgtaaactgacggcccacacccaaggttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtaaaagggacattgccaaaaccatggtgtaaactgacggcccacacccaaggttgtt 380

                                                                       
Query: 181 ctcttaccttaaaaaatatacacatacataatgctcctcattcaaaaataagcatagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcttaccttaaaaaatatacacatacataatgctcctcattcaaaaataagcatagttt 440

                                                                       
Query: 241 taaaactatgataaaagcaaaacaaggagagtaaagatataataactgagaaagagggct 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 taaaactatgataaaagcaaaacaaggagggtaaagatataataactgagaaagagggct 500

                                                                       
Query: 301 ggagaaatggcccagaggttaacagcactgactgctcttccagaggccctgagttcaatt 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 ggagaaatggcccagaggttaacagcactgactgctcttccagaggtcctgagttcaatt 560

                                                                       
Query: 361 ctcagtatcacaaccacctgtaatgggatctgattccctcttttgctgtgtctgatgaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcagtatcacaaccacctgtaatgggatctgattccctcttttgctgtgtctgatgaca 620

              
Query: 421 gcg 423
           |||
Sbjct: 621 gcg 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)