BAC Information

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BAC

Clone NameMSMg01-397A01
Chromosome9 (Build37)
Map Location 10,729,710 - 10,891,329
singlet/doubletdoublet
Overlap geneLOC665178
Upstream geneCntn5, LOC665154, LOC100039970
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397A01.T7 (MSMg01no397_a01.b1)MSMg01-397A01.TJ (MSMg01no397_a01.g1)
ACCAG497444AG497445
length732718
length of high quality
(start - end)		593 (35 - 627)533 (80 - 612)
definitionCHROMAT_FILE: MSMg01no397_a01.b1 PHD_FILE: MSMg01no397_a01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:17 2005CHROMAT_FILE: MSMg01no397_a01.g1 PHD_FILE: MSMg01no397_a01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,890,961 - 10,891,329)(10,729,710 - 10,730,242)
sequence
CCCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCTTGTCTTATTTCTGCTTAATATTGCTGGGATGAAACACCATGAC
CAAAAGCAACTTGGTGAATAAAAGGATTTAATTCACTTACACTTCTAGGT
AACTGTGTGAAGTCAGGACAAGAACTTGAACAGGATAGGAACCTGCAGGC
AGGAGCCATGAAGGGGTCCTGCTTTTTGGCTTTCTCATCTTATTTTGTAC
AGCCTGCTCTTTCATAGAACACCACACAACAAGCCCAGGGGTGGTACCAG
ATGTAATGGGCTGGACCCTCCCCAATAAATTACTAATTATACAATTGGCT
CACAGGATTGCTTACAACCCAATCTTATGCAGTCATTTTCTCAGTTGAGG
CTCTCTTCTCTCAGGTAACTCTAGCTTGTGTCAATTTGACATAAAACTAT
CCAGCACATAATTTTATGCAACCTGAAACTATATACATTTTATGTTTTAG
ATCGAACCACAGAAAAGCCAAACCTGTCTTTATATCTTCATACATCTGTT
GAAAATATTTGTTCTCCACAACCTGATACTCCCAATATTTCAGTAAATAA
ATGTAAAGAAAAAATGACTTTTCTACCATGTGTTTTTTCAGTTTTACCAA
ACATTTACATAAAATTTGTACTAAGATTTTCAGTTCAACAAACTGTTGTT
TTTTAATACAATGTAATCCACACAATATAATG

CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAGGTGTTCTAGGGGAA
GCCCTTTAAGCCTTTTATTATTTTCTCTAAATGTTTAAATTTGTGTCTTT
TGCATTCTGACTAACAATTTCTTTCCAGGAAATAAAATATGCTTTACTCT
TTCTCCCTGTTTATTGGCCTCATGCTGTCTCCTGATTTCTTATAATTTGT
AACAGTTTTAACTTTCAAGTGGCAAAAATAATTTCAGTCTTCTTTCAAGG
TAAAAAAAGCCTATAAATTAAATATTGAAAAAGACAAAAAATATAGGATG
ATAAATGATAATCATTTATATTAAAAATGTAGTATCACTTACAAATTGGC
AAATGTCATATTTCATTAATCTAACTTTTATCCTGTAAGCGTTTGTTAAA
CTTAATAAACAGCAATATTCTCAATGTGTTATTTAAAACTCAGTATTCAG
TAAAGCTTTTGGCTAAAGTAAGCAATACTAAAATATGAAAATTTCTTATG
CATTTATTAATTCAATATACCCTGAATAACCTTAGGCATTTAATGACATG
ACAGAAAGACTACTCTATAACTGAAGAAAATAAATATAATTAGTGCATTA
GCATTTTGTTTATATGCATTTGCGGCCTCCATATAAAAATGAAGACCAGA
AGAATGTATTTTGAATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_a01.b1 MSMg01no397_a01.b1 CHROMAT_FILE:
MSMg01no397_a01.b1 PHD_FILE: MSMg01no397_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:17 2005
         (593 letters)



>mm_chr9_10890337_10891329
          Length = 993

 Score =  683 bits (353), Expect = 0.0
 Identities = 365/369 (98%)
 Strand = Plus / Minus

                                                                       
Query: 225 ctttcatagaacaccacacaacaagcccaggggtggtaccagatgtaatgggctggaccc 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 993 ctttcatagaacaccacacaacaagcccaggggtggtaccagatgtaatgggctggaacc 934

                                                                       
Query: 285 tccccaataaattactaattatacaattggctcacaggattgcttacaacccaatcttat 344
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 accccaataaattactaattatacaattggctcacaggattgcttacaacccaatcttat 874

                                                                       
Query: 345 gcagtcattttctcagttgaggctctcttctctcaggtaactctagcttgtgtcaatttg 404
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 873 gcagtcattttctcagttgaggctctcttgtctcaggtaactctagcttgtgtcaatttg 814

                                                                       
Query: 405 acataaaactatccagcacataattttatgcaacctgaaactatatacattttatgtttt 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 acataaaactatccagcacataattttatgcaacctgaaactatatacattttatgtttt 754

                                                                       
Query: 465 agatcgaaccacagaaaagccaaacctgtctttatatcttcatacatctgttgaaaatat 524
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 agatcgaaccacagaaaagtcaaacctgtctttatatcttcatacatctgttgaaaatat 694

                                                                       
Query: 525 ttgttctccacaacctgatactcccaatatttcagtaaataaatgtaaagaaaaaatgac 584
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ttgttctccacaacctgatactcccaatatttcagtaaataaatgtaaagaaaaaatgac 634

                    
Query: 585 ttttctacc 593
           |||||||||
Sbjct: 633 ttttctacc 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no397_a01.g1 MSMg01no397_a01.g1 CHROMAT_FILE:
MSMg01no397_a01.g1 PHD_FILE: MSMg01no397_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:17 2005
         (533 letters)



>mm_chr9_10729510_10730442
          Length = 933

 Score = 1000 bits (517), Expect = 0.0
 Identities = 529/533 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccaaggtgttctaggggaagccctttaagccttttattattttctctaaatgtttaaa 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccaaggtgtcctaggggaagccctttaagccttttattattttctctaaatgtttaaa 260

                                                                       
Query: 61  tttgtgtcttttgcattctgactaacaatttctttccaggaaataaaatatgctttactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgtgtcttttgcattctgactaacaatttctttccaggaaataaaatatgctttactc 320

                                                                       
Query: 121 tttctccctgtttattggcctcatgctgtctcctgatttcttataatttgtaacagtttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctccctgtttattggcctcatgctgtctcctgatttcttataatttgtaacagtttt 380

                                                                       
Query: 181 aactttcaagtggcaaaaataatttcagtcttctttcaaggtaaaaaaagcctataaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactttcaagtggcaaaaataatttcagtcttctttcaaggtaaaaaaagcctataaatt 440

                                                                       
Query: 241 aaatattgaaaaagacaaaaaatataggatgataaatgataatcatttatattaaaaatg 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 aaatattgaaaaagacaaaaaatataggatgataaatgatagtcatttatattaaaaatg 500

                                                                       
Query: 301 tagtatcacttacaaattggcaaatgtcatatttcattaatctaacttttatcctgtaag 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagtatcccttacaaattggcaaatgtcatatttcattaatctaacttttatcctgtaag 560

                                                                       
Query: 361 cgtttgttaaacttaataaacagcaatattctcaatgtgttatttaaaactcagtattca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgtttgttaaacttaataaacagcaatattctcaatgtgttatttaaaactcagtattca 620

                                                                       
Query: 421 gtaaagcttttggctaaagtaagcaatactaaaatatgaaaatttcttatgcatttatta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 621 gtaaagcttttggctaaagtaagcaatactaaaatatgaaaatttcttatgcatttattt 680

                                                                
Query: 481 attcaatataccctgaataaccttaggcatttaatgacatgacagaaagacta 533
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attcaatataccctgaataaccttaggcatttaatgacatgacagaaagacta 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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