Query= MSMg01no397_j01.b1 MSMg01no397_j01.b1 CHROMAT_FILE:
MSMg01no397_j01.b1 PHD_FILE: MSMg01no397_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:02 2005
(159 letters)
>mm_chr9_69528857_69529415
Length = 559
Score = 290 bits (150), Expect = 3e-83
Identities = 159/166 (95%), Gaps = 7/166 (4%)
Strand = Plus / Plus
Query: 1 acttcgaatgggtaccccagaactgaagagaccaaatggtgtgcaaggagtctgaagggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 acttcgaatgggtaccccagaactgaagagaccaaatggtgtgcaaggagtctgaagggc 253
Query: 61 -------atatgtcatttgaatttggcagtttatatcaaaatagaagacatgatctctaa 113
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gtatgtcatatgtcatttgaatttggcagtttatatcaaaatagaagacatgatctctaa 313
Query: 114 agatcaaatagtctttcctttgaatgagaacatcatcaagttttgg 159
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 agatcaaatagtctttcctttgaatgagaacatcatcaagttttgg 359
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space: 83201
Effective search space used: 83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no397_j01.g1 MSMg01no397_j01.g1 CHROMAT_FILE:
MSMg01no397_j01.g1 PHD_FILE: MSMg01no397_j01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:02 2005
(434 letters)
>mm_chr9_69703569_69704402
Length = 834
Score = 750 bits (388), Expect = 0.0
Identities = 400/404 (99%)
Strand = Plus / Minus
Query: 1 aatagctcttcagggacaactgctccactaagtgtgacagcaccaccatcgaagagatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aatagctcttcagggacaactgctccactaagtgtgacagcaccaccatcgaagagatga 345
Query: 61 agatggtattaaactgactttgagtcattcctggttgatctaacaacagcagctaagtga 120
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 agttggtcttaaactgactttgagtcattcctggttgatctaacaacagcagctaagtga 285
Query: 121 catagactttgaaagaagctcttcctaactgtgatcagggtgctaagaaaaagggggagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 catagactttgaaagaagctcttcctaactgtgatcagggtgctaagaaaaagggggagg 225
Query: 181 ggccaccaatggtgttgcaagataacttttatggttgctcctaccaaatacctgacagag 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 224 ggccaccaatggtgttgcaagataacttttatggttgctccgaccaaatacctgacagag 165
Query: 241 agccacttaaggagggcatggtatatttcagcttagctccaggggacacttggacagcaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 164 agccacttaaggagggcatggtatatttcagcttagctccaggggacacttgaacagcaa 105
Query: 301 ggaagtcaggacaccagaaacatgaggcagttagcctctctctcttcccaagatgacccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 ggaagtcaggacaccagaaacatgaggcagttagcctctctctcttcccaagatgacccc 45
Query: 361 ccatggaagcttcctggaccttcccagccattcatgctttatgc 404
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 ccatggaagcttcctggaccttcccagccattcatgctttatgc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space: 350625
Effective search space used: 350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
