Query= MSMg01no398_k07.b1 MSMg01no398_k07.b1 CHROMAT_FILE:
MSMg01no398_k07.b1 PHD_FILE: MSMg01no398_k07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:26 2005
(451 letters)
>mm_chr9_10644448_10645298
Length = 851
Score = 669 bits (346), Expect = 0.0
Identities = 434/480 (90%), Gaps = 33/480 (6%)
Strand = Plus / Plus
Query: 1 ttagtaagaggctgattcaaaggacaaataaacaacaacaacaaaatcttatttctaaga 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 176 ttagtaagaggctgattcaaagaacaaataaacaacaacaacaaaatcttatttctaaga 235
Query: 61 tatgaatcataacaacactaacagcataggataaaaagtttcatgcttacaaaaaaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tatgaatcataacaacactaacagcataggataaaaagtttcatgcttacaaaaaaaaaa 295
Query: 121 aaaccctaaaac----caaaaa--------ccaaaaa-----taaaaacaaa--caaaca 161
||| | |||| |||||| ||||||| ||||| |||| |||| |
Sbjct: 296 aaaaacaaaaaaaaaacaaaaaaaaaaaaaccaaaaaaaccctaaaaccaaaaacaaaaa 355
Query: 162 a-----acaaaaaaaacc-accaacaagaaactccccaccaaaactgcatgatggctcac 215
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ataaaaacaaaaaaaacccaccaacaagaaactccccaccaaaactgcatgatggctcac 415
Query: 216 ctgtaccgaccttctctttaccagaccctggctaatatttt----attttctcatgttag 271
||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 416 ctgtatcgaccttctctttaccagaccctggctaata----gagcattttctcatgttag 471
Query: 272 aaacatactgatacaaggataaccctgaatcacagcagcacagtcctaaaaataaacttt 331
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 472 aaacatactgatacaaggataaccctgaatcagaccagcacagtcctaaaaataaacttt 531
Query: 332 tctaaagtctctcaggccctttgttatctggacttccttgtcacaagtgtgcccttcttt 391
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 532 tctaaagtctctcaggtcctttgttacctggacttccttgtcacaagtgtgcccttcttt 591
Query: 392 ctggcccatttcattacgcagtggcccctggctctgccatttgtgacagccactttaagt 451
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ctggcccatttcattacgcggtggcccctggctctgccatttgtgacagccactttaagt 651
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space: 370881
Effective search space used: 370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no398_k07.g1 MSMg01no398_k07.g1 CHROMAT_FILE:
MSMg01no398_k07.g1 PHD_FILE: MSMg01no398_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:26 2005
(292 letters)
>mm_chr9_10801284_10801975
Length = 692
Score = 549 bits (284), Expect = e-161
Identities = 290/292 (99%)
Strand = Plus / Minus
Query: 1 attgtactacaggaggatcctgcaatacctctcctgggcatatatccagaagattttaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 attgtactacaggaggatcctgcaatacctctcctgggcatatatccagaagattttaaa 366
Query: 61 gtttttaaactgtttatttggcttgattttggtcttagtaacagtattagatttgttcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gtttttaaactgtttatttggcttgattttggtcttagtaacagtattagatttgttcat 306
Query: 121 taaaatcatattcttatcatattcattgaaatattcaaactctctttctagttattttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 taaaatcatattcttatcatattcattgaaatattcaaactctctttctagttattttaa 246
Query: 181 ataaattgtatttgataatttttaaattttctgattgtcagtcaaagtttaattaattac 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ataaattgtatttaataatttttaaattttctgattgtcagtcaaagtttaattaattac 186
Query: 241 cagaatctttggcccccttaagattatagatatttaataatattattgtctg 292
|||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 185 cagaatctttggcccccttaagattatagatatttaataacattattgtctg 134
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
