BAC Information

Click to search

BAC

Clone NameMSMg01-400K16
Chromosome9 (Build37)
Map Location 75,797,384 - 75,797,768
singlet/doubletsinglet
Overlap genenone
Upstream geneBC031353, Arpp19, LOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5
Downstream geneEG620071, Hmgcll1, Gfral, Hcrtr2, C530008M07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400K16.T7 (MSMg01no400_k16.b1)MSMg01-400K16.TJ (MSMg01no400_k16.g1)
ACCAG500235AG500236
length784791
length of high quality
(start - end)
385 (79 - 463)420 (80 - 499)
definitionCHROMAT_FILE: MSMg01no400_k16.b1 PHD_FILE: MSMg01no400_k16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:03 2005CHROMAT_FILE: MSMg01no400_k16.g1 PHD_FILE: MSMg01no400_k16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTAACCTCTTAAATTGCGGCCGCTATAAGAATCACTATTTCAAGAGGATC
CGCGGAATTCAAGTTTTTTCTTTTTTACAATGAAAATTCAAACCACTATA
GCTTTAGAGATGTTCTAAACTTACAACACTGAAGTATTATTAATTATACA
CATTCTTCCAGATCTATAATAGCTCCAATAACTCTTGTTTAACTTTAGAA
TGAATAAAATTAAAAATAATTGAAGAAAGAAATTATAAACCACTCTTTAA
TGAATGCTAAAATTATAAATTCCAAACTAAAATTTAATTGTAACAAAATT
TTATCAACCAATTACATATTAAATATATTTATCTGTATGTATATATGTTT
TTATTTATTAGCATATTATAACCAATCATATTTTATCCAATGAATGGTTT
ATTTAACAAGAGAAAATTAGTGCAATTTACTATGTAAGAATATTAAAAAA
AACAAACAAACAAACCTAATATGATCATCTCAGCAAACTCATCAAAAGCA
CGTGAGAAAACCAAACGTCCACTGCAAATTTCTTAAATGCCCATGTAGTT
AAGAAAACTCATTCACAATAAATTTTCATGTAGAAAAAAGAGGGAAGAAT
CCTACAAATTGTAAAGGGATGTTTCCATACAATGGACCGGTAATATCACA
GCGGGAGGGTCTCTCTTTTTATTTTTTATAAGTGGCCCTCACCGACAATA
TGAATGGCCCCCTATATTTTCCCTTTAATAACCCGGTTAATTGGCCCTCT
CCTTCTGCCCAAAAAGGCCAATATACTGCTCCCG
NTTTTTTCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGGATACCGAATG
GCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTG
GAAATCCGTCTGGCGGTTCCTCAGATTATTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGT
AAGAAGGACACATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGC
CAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATTCTTACACCATGTAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTAACCTAAATGGATGGACCTGGGAGGGCATCT
TCCTGGAGTGAGGTAAAACATTTTCTAAGGGAACTCCCCCAAATGGATTT
CCCTGATTAAGTGGGATATTTACTCCCTAACCCCATGTAAACCCCACAAT
TTTAAAATCAATTTCCTTTTTCATTTCTTATTACTCCACAAAAAATACTA
AATATTGAATTGTGTGTTACTCTTTGCCCCCCTCCTTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_k16.b1 MSMg01no400_k16.b1 CHROMAT_FILE:
MSMg01no400_k16.b1 PHD_FILE: MSMg01no400_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:03 2005
         (385 letters)



>mm_chr9_75797184_75797966
          Length = 783

 Score =  694 bits (359), Expect = 0.0
 Identities = 378/385 (98%), Gaps = 2/385 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgaaaattcaaaccactatagctttagagatgttctaaacttacaacactgaagtatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgaaaattcaaaccactatagctttagagatgttctaaacttacaacactgaagtatt 260

                                                                       
Query: 61  attaattatacacattcttccagatctataatagctccaataactcttgtttaactttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attaattatacacattcttccagatctataatagctccaataactcttgtttaactttag 320

                                                                       
Query: 121 aatgaataaaattaaaaataattgaagaaagaaattataaaccactctttaatgaatgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgaataaaattaaaaataattgaagaaagaaattataaaccactctttaatgaatgct 380

                                                                       
Query: 181 aaaattataaattccaaactaaaatttaattgtaacaaaattttatcaaccaattacata 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 381 aaaattataaattccaaactaaaatgtaattgtaacaaaattttatcaatcaattacata 440

                                                                       
Query: 241 ttaaatatatttatctgtatgtatatatgtttttatttattagcatattataaccaatca 300
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaatatacatatctgtatgtatatatgtttttatttattagcatattataaccaatca 500

                                                                       
Query: 301 tattttatccaatgaatggtttatttaacaagagaaaattagtgcaatttactatgtaag 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 tattttatccaatgaatggtttatttaacaagagaaaattagtgtaatttactatgtaag 560

                                    
Query: 361 aatattaaaaaa--aacaaacaaac 383
           ||||||||||||  |||||||||||
Sbjct: 561 aatattaaaaaacaaacaaacaaac 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 783
Length adjustment: 9
Effective length of query: 376
Effective length of database: 774
Effective search space:   291024
Effective search space used:   291024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)