BAC Information

Click to search

BAC

Clone NameMSMg01-401C03
Chromosome9 (Build37)
Map Location 10,801,381 - 10,801,963
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn5, LOC665154, LOC100039970, LOC665178
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401C03.T7 (MSMg01no401_c03.b1)MSMg01-401C03.TJ (MSMg01no401_c03.g1)
ACCAG500590AG500591
length751755
length of high quality
(start - end)
242 (75 - 316)583 (80 - 662)
definitionCHROMAT_FILE: MSMg01no401_c03.b1 PHD_FILE: MSMg01no401_c03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:41 2005CHROMAT_FILE: MSMg01no401_c03.g1 PHD_FILE: MSMg01no401_c03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCTATTTCGAGAAAAATTACACTTAACTAATGACTGTTACTGAC
AAGCTGATTGGTGTAGTGGTGCGTACCTCAAATCCCAGCGCTCTGAAGGC
ATAACCAGGAACACTGACCAATGTTTGAATCCAGCATGGTCTACATAGAG
AATTCCATGCCATCAAGGGCTATTTAGTAAGAGGCTGATTCAAAGGACTA
TATAAACAACAACAACAAAATCTTATTTCTAAGATATGAATCATAACAAC
ACTAACAGCATAGGATTAATAGCTTCATGCTTACAAAAAAAAAAAAACCC
TAAAACCATATAATCAAACCTAAAAACAAACAAACAAACTAAAAAAACCA
CCAACAAGAAACTCCCCACCAAAACTGCTTGATGGCTCACCTGTACCGAC
CTTCTCTTTACCAGACCCTGGCTAATAGAGCATTTTCTCATGTTAGAAAC
ATACTGATACAAGGATAACCCTGAATCAGAGCAGCACAGTCCTAAAAATA
AACTTTTCTAAAGTCTCTCAGGCCCTTTGTTATCTGGACTTCCTTGTCAC
AAGTGTGCCCTTCTTTCTGGCCCATTTCATTACGCAGCGGTCCCCGGTTC
TGTTCATTTGTGTTAGCCCCCTTAATTCCCATTGTTTACTCTTGTCCTAT
TATCCTAGATCCTCCACCCATGTCTCGGTCCGTACACTCCTTTCTTCTAC
C
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCTGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAGCCCTGAGATTCCATCTCACACCAGTCAGAATGGGTA
AGATCAAAAATTCACGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGT
GGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTG
GAATTCAGTCTGGTGGTTCCTCATAAAATTGGACATTGTACTACAGGAGG
ATCCTGCAATACCTCTCCTGGGCATATATCCAGAAGATTTTAAAGTTTTT
AAACTGTTTATTTGGCTTGATTTTGGTCTTAGTAACAGTATTAGATTTGT
TCATTAAAATCATATTCTTATCATATTCATTGAAATATTCAAACTCTCTT
TCTAGTTATTTTAAATAAATTGTATTTGATAATTTTTAAATTTTCTGATT
GTCAGTCAAAGTTTAATTAATTACCAGAATCTTTGGCCCCCTTAAGATTA
TAGATATTTAATAATATTATTGTCTGTGCTCTAATGTATTTGTTAATATA
TTTCTTCATGCAAAGATTATCTATATATCTCTCTTTTGANGAAAATATTG
AGTAATCATTGGAATATTTTGATATTAGCTAGAAGTTAGTAAAATGTTTA
GACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_c03.g1 MSMg01no401_c03.g1 CHROMAT_FILE:
MSMg01no401_c03.g1 PHD_FILE: MSMg01no401_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:41 2005
         (583 letters)



>mm_chr9_10801029_10802011
          Length = 983

 Score = 1096 bits (567), Expect = 0.0
 Identities = 579/583 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacctgaggaataccgaatggctgagaagcacctgaaaaaatgttcagcatccttaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 tcacctgaggaataccgaatggctgagaagcacctgaaaaaatgttcagcatccttaatc 876

                                                                       
Query: 61  atcagggaaatgcaaatcaaaacagccctgagattccatctcacaccagtcagaatgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 atcagggaaatgcaaatcaaaacagccctgagattccatctcacaccagtcagaatgggt 816

                                                                       
Query: 121 aagatcaaaaattcacgtgacagcagatgctggcaaggatgtggagaaagtggaacactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 aagatcaaaaattcacgtgacagcagatgctggcaaggatgtggagaaagtggaacactc 756

                                                                       
Query: 181 ctccattgctggtgggattgcaagcttgtacaaccactctggaattcagtctggtggttc 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ctccattgctggtggtattgcaagcttgtacaaccactctggaattcagtctggtggttc 696

                                                                       
Query: 241 ctcataaaattggacattgtactacaggaggatcctgcaatacctctcctgggcatatat 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ctcagaaaattggacattgtactacaggaggatcctgcaatacctctcctgggcatatat 636

                                                                       
Query: 301 ccagaagattttaaagtttttaaactgtttatttggcttgattttggtcttagtaacagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ccagaagattttaaagtttttaaactgtttatttggcttgattttggtcttagtaacagt 576

                                                                       
Query: 361 attagatttgttcattaaaatcatattcttatcatattcattgaaatattcaaactctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 attagatttgttcattaaaatcatattcttatcatattcattgaaatattcaaactctct 516

                                                                       
Query: 421 ttctagttattttaaataaattgtatttgataatttttaaattttctgattgtcagtcaa 480
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 515 ttctagttattttaaataaattgtatttaataatttttaaattttctgattgtcagtcaa 456

                                                                       
Query: 481 agtttaattaattaccagaatctttggcccccttaagattatagatatttaataatatta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 455 agtttaattaattaccagaatctttggcccccttaagattatagatatttaataacatta 396

                                                      
Query: 541 ttgtctgtgctctaatgtatttgttaatatatttcttcatgca 583
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ttgtctgtgctctaatgtatttgttaatatatttcttcatgca 353


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)