BAC Information

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BAC

Clone NameMSMg01-402D16
Chromosome9 (Build37)
Map Location 93,949,693 - 93,950,041
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674371
Downstream geneLOC384967, EG384968, 1190002N15Rik, EG667601, Slc9a9
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402D16.T7 (MSMg01no402_d16.b1)MSMg01-402D16.TJ (MSMg01no402_d16.g1)
ACCAG501426AG501427
length732738
length of high quality
(start - end)
457 (50 - 506)349 (78 - 426)
definitionCHROMAT_FILE: MSMg01no402_d16.b1 PHD_FILE: MSMg01no402_d16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:03 2005CHROMAT_FILE: MSMg01no402_d16.g1 PHD_FILE: MSMg01no402_d16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGCCATTTTCTGAGTATATCTATCCCAATTATACATTCTGG
AACTGGAGAAATCACCACAGGATGTGTCCGGGGACCTACTGGACCTACTG
TGAGTCGGACATCAGTCAAAACTCCATTAATCACCTGCCCTCCATAAGCC
CCTATGTTAACTGGAGGGCCACAATGTTTCTTGGGATCCCCTGGGATCAG
TGTCAACTCAGAACCAGTATCCAGCAGACCCCGAAAAGTCTGATTATTTC
CTTTTCCCCAGTGTACAGTTACCCTTGTAAAAGGCCGTAGGTCCCTCTGG
GGAAGAACTGGAGAAAGGGTAACAGCAAAACCTTTGAGTGTCTTATCAAG
ATCCTTCCTCAGCGGAACCTGGCCACCCCTTCATTCAAGGGGTTCTGGAT
CTGCAAACTGTCTCAAGTCTGGAAATTGATTCACTGGCCGAGATTGCTGT
TTACCACGATCTAATGTAGCCTTTCTTTCATTTGTTTGAGAATTTTTCTG
CTTATACAGATCAAACAAATACGCAGTACGCTTCCTATGTATTTCATTCC
TGGAAACACCATGATTGGTTAGCCCGTACCAAAGGTGCCGCCGAGTCATG
CCTTTATTAACTTCACCCTCTCCTGTGCTGAACACTTACTGGGTATGTTA
ATATAAAACATTCTTTTGCCAACGCTGGTCAT
TTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAATAGACTCCAAGACAAGAAGA
ACCCTTTAATTAGATTTTCAATAGCATTCTCCAGAACCTACTGCTCATCA
TCCTGACTTCTTATCTTCATTGACTTAGGTGAAAACAAAACAAAGATAAA
TAGTAAAATTCATTACTAATCCATTTAGTTCAACTGCTTACCCCCTGTCC
TCAGGGAAGACAACCCAGCTTTCCCCAGACAGCACTATGTTCCTTACCCT
TAAATGCTGAGGAATTTATCTAATGCCCCTGCACCACACAGGAATCTGGC
TTACTGAAAAGAAATAGGACACTTTTCTTCTTTAAGTCACAAGGAACTTG
TTTATTTGAAAACTGAGAAATGAAGAGACACCAGGAGTAAATGGTGTTCG
TGCAGCATCTAAAAAATAGCAACCAATAGGTTATATTCTCAAGGCAATAC
TATAGATAGCATAGGGAAATTTTGCATTATGCAAAAACGACTCATAAGTA
CCTTGCCTTAGTTTCACCAGTGCTGTTCCTGTTGCTGTAATAAAGTACTC
AGACAAATGTCTGGAAGGAGAAATGGTTTATTTTAATTTTACTGGTTCAG
GTTATTACCCCCTCTTGGCAGGGCAAGTTAAGATGTGAACGTCATTTGAA
GTAACCGACTAAACACTTGCAACCACTAGCTAATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_d16.g1 MSMg01no402_d16.g1 CHROMAT_FILE:
MSMg01no402_d16.g1 PHD_FILE: MSMg01no402_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:03 2005
         (349 letters)



>mm_chr9_93949493_93950241
          Length = 749

 Score =  675 bits (349), Expect = 0.0
 Identities = 349/349 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatagactccaagacaagaagaaccctttaattagattttcaatagcattctccagaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 caatagactccaagacaagaagaaccctttaattagattttcaatagcattctccagaac 490

                                                                       
Query: 61  ctactgctcatcatcctgacttcttatcttcattgacttaggtgaaaacaaaacaaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ctactgctcatcatcctgacttcttatcttcattgacttaggtgaaaacaaaacaaagat 430

                                                                       
Query: 121 aaatagtaaaattcattactaatccatttagttcaactgcttaccccctgtcctcaggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aaatagtaaaattcattactaatccatttagttcaactgcttaccccctgtcctcaggga 370

                                                                       
Query: 181 agacaacccagctttccccagacagcactatgttccttacccttaaatgctgaggaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 agacaacccagctttccccagacagcactatgttccttacccttaaatgctgaggaattt 310

                                                                       
Query: 241 atctaatgcccctgcaccacacaggaatctggcttactgaaaagaaataggacacttttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atctaatgcccctgcaccacacaggaatctggcttactgaaaagaaataggacacttttc 250

                                                            
Query: 301 ttctttaagtcacaaggaacttgtttatttgaaaactgagaaatgaaga 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttctttaagtcacaaggaacttgtttatttgaaaactgagaaatgaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)