BAC Information

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BAC

Clone NameMSMg01-402F17
Chromosome9 (Build37)
Map Location 13,834,196 - 13,834,550
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039729, LOC100039758, Maml2, Mtmr2, Cep57, 2810485I05Rik, LOC665329
Downstream geneSesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4, Panx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402F17.T7 (MSMg01no402_f17.b1)MSMg01-402F17.TJ (MSMg01no402_f17.g1)
ACCAG501523AG501524
length737738
length of high quality
(start - end)
395 (50 - 444)355 (79 - 433)
definitionCHROMAT_FILE: MSMg01no402_f17.b1 PHD_FILE: MSMg01no402_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:13 2005CHROMAT_FILE: MSMg01no402_f17.g1 PHD_FILE: MSMg01no402_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAATTAATCCTCATGTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCACCTTACCAATACCGAATGGCAGAGAAGCACCTGAAAAA
ATGCTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTCC
TCAGAAAACTGGATATAGTACTACCGGAGGATCCAGCAATACCTCTCTTG
GGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCA
GATGCCCCTCATCAGAGGAATGGATACAGAAGATGTGGTACATCTACACA
ATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTGGT
CTAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACTCATTTCC
TAAGGAACCCCCATCATATGTACTCCCTGATAAGTGGATATTAGCTCTCC
AACCCTATATACTCCCGATACAAGATATCCTTTTTCTAATACTTGCAAAT
TCTTAATAATGAATAATGTCACCGCGTACTCTATGTG
NCCCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCAGATGTTGAATACATACA
GTAGATAGACAGCCTCAATCCCATGACACAGCTTTCTGTGATAAACCACA
AGAGTCCAAGTCATAGGAAAATGAACAAATCATTCACTCATATTGGAAAC
AGACTCAGATGGGAAACCTCTTTGTCCAAAAGTACTGACAAGTAAGTAGC
ATCTGGTCTTAAAATGAGCTCCCCATCTCTACATCCAATGAGTTTCATGG
TATCACTTTAGAAACTGACCTTACTCTCTGTCACTTCTTCTAAATAGTTT
TTCAGCTTACCTATCCTTCTATATAGTTCACCTCCCCTCTATTGCTACTT
ATGACATGGAAAATTGCCTCCTGGTTTTCAAATTATATTCTGGACATACT
CTTTGGTTTACCCCAAACCTATCAGTGTGCCCATCCTCATGGAAACCACA
GGAACAGAAGTTGTATAACATTTTCCTCAATGCATTATATCCTGCAGGGA
AATATCATTAAGACTTGGAAAGTAAGCAACTCACAAAGCTCATGAAGTTC
CTGAAACTGACCCGATATACTTGGGCCTTCCCCCCTTGAAAATTCCTAAG
TATCAAGCACTGGTGGAGAAACACTTCCTAACCTACACAGCTGTCTAAAA
AAAGACTGAAACTGGCCTCAAACGTCCTGAAAAAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_f17.g1 MSMg01no402_f17.g1 CHROMAT_FILE:
MSMg01no402_f17.g1 PHD_FILE: MSMg01no402_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:13 2005
         (355 letters)



>mm_chr9_13833996_13834750
          Length = 755

 Score =  625 bits (323), Expect = 0.0
 Identities = 347/355 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcagatgttgaatacatacagtagatagacagcctcaatcccatgacacagctttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tctcagatgttgaatacatacagtagatagacagcctcaatcccatgacacagctttctg 496

                                                                       
Query: 61  tgataaaccacaagagtccaagtcataggaaaatgaacaaatcattcactcatattggaa 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 495 tgataaaccacgagagtccaagtcataggaaaatgaacaaatcattcactcatcttggaa 436

                                                                       
Query: 121 acagactcagatgggaaacctctttgtccaaaagtactgacaagtaagtagcatctggtc 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 435 acagactcagatgggaaacctctttgtccaaaagtactggcaagtaagtagtatctggtc 376

                                                                       
Query: 181 ttaaaatgagctccccatctctacatccaatgagtttcatggtatcactttagaaactga 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 375 ttaaaatgggctccccatctctacatccaatgagtttcatggtatcactttagaaactgc 316

                                                                       
Query: 241 ccttactctctgtcacttcttctaaatagtttttcagcttacctatccttctatatagtt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 315 ccttactctctgtcacttcttctaaatagtttttcagcttacctatccttctctatagtt 256

                                                                  
Query: 301 cacctcccctctattgctacttatgacatggaaaattgcctcctggttttcaaat 355
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 255 cacctcccctctattgctacttatgacatgtaaaattgcctcctggttttcaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)