NNAATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTTATTTACTAGCTTTGCTCAATCCTGACCAAGTCACCTT
GGGAAAGTAAATTAGTGTCTCCAAGTTTTAAGGTTCATGTATAAAAGATA
AAGAATATAATAGGGTTGATATGAAAATTAAATAAGGATAGTCCCATAGA
GCTCATAACAAAGAGTCTGACACAAGGGAGAATATTCATTGTCACTGAAA
GATCAGTCAGACATACTGTTCTCTTGCTACTTAGAAGTCTCAGCAGAATG
GCTGTGGTCCTTATTCAGTTAGCAGTGCATGAACATGGATTGAGAAGTGT
ATACAGGCATTAAAGAAGAAAGCACATAAAATCATTCTTTTTTTGTGGAT
TCTGTGTGATTTATCTATACTTTACCTGACAAATGCATCCAGTAGAATTC
TTAGTTTTGTCCACGAGAAAAACTTATTTTAGAAGTTATAATCTCTAGTA
TTATTTCTAAAATTAAAACTGGTCAACAGGGGAGAAAGTAGATATAAATG
CTTTCTACACCTTCAAAATTATTGTCAGAAGCATATTAAAATTGAACAGA
AAAATGCTGTATTAAAAATTCAAAACTCAACACACGAAGGCTTTATATAG
CTTACATAGCTAATTAATTTATGGAGTGAATCCCAAGTATAAAATTATTG
AATGTGAAATATGATTCGTCCTTTATTTTTAAN

TTTTTCTCCCNTTATNCCNCCCTTACCCCCTACCATACTCTAAAGAANNN
CCTCCCCNCNNNNNNNNCGGCAAAAGGCATAAATGGGGTTAGGGCCTTGG
GGNCGGGNCCGGCCCTGGGTTTTTCACCGCAACAATTTTAGGGNTGGAAC
ACTAATAGAAAAGTATTCCGCCGAGAAATTCCCCTGGAATCTCCACCCCA
ATATTTTTTTAACCAAGTGAAAGGGGGGTCCCTTGGGAATTTTTTGGCCC
AAAAAGGATTTTTTTCCTGGCCTCCACAAGGGGAAAAACCCAGGGGGGAA
TTTTTTTTTTTCCTTTTGAGGAGGTTTTTTTATAAAAATAAGAGGGGGCG
AAAAAAAATTTTTAAAGGGGAAATTTTTCCTCCAAAAATTATGGGGAACC
CCCACCCCCCCCTCTTTGGGGTGGGTTCCACCCCCCCCCNNNCCCCCCCC
CCCCACAAACACAAAAAAAAAGGGCCCCCCCCCCTCTGTGACTTTTGTGT
GTGGGAGAAAAAAAAGAGAGGGGCTCTATAAAAAAACACCTCCCCGCAAA
AAACATCGCGTCTCCCCCCAAAAAAAAATATTTTTGTGGGGGGGGAGGAA
ATTCTGTCTTTTTTCTTTCTTTTCCCCCAAACACACAAAAAAGAGGGGGA
GGGCGGGGTGGGCGCCCCCTTCTTTTTTTTTTTTTTATAACAACCCCCCC
CGCCCGCGGGGGAGAAAAAATAAAAAACAAAACAAAAAAATAGTCGGCGC
CGCCCCCCCCTCCAAAAAACAAACAAAACACACATAGNGTGTTTGCTCCC
CCCCCCCCCCCTCCGCCCCCCCAAAGGAAAG

Query= MSMg01no402_f20.b1 MSMg01no402_f20.b1 CHROMAT_FILE:
MSMg01no402_f20.b1 PHD_FILE: MSMg01no402_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:13 2005
         (557 letters)



>mm_chr9_81741700_81742656
          Length = 957

 Score = 1017 bits (526), Expect = 0.0
 Identities = 547/554 (98%), Gaps = 1/554 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctt-atttactagctttgctcaatcctgaccaagtcaccttgggaaagtaaat 63
           |||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 gaattctcttaaagtactagctttgctcaatcctgaccaagtcaccttgggaaagtaaat 870

                                                                       
Query: 64  tagtgtctccaagttttaaggttcatgtataaaagataaagaatataatagggttgatat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 tagtgtctccaagttttaaggttcatgtataaaagataaagaatataatagggttgatat 810

                                                                       
Query: 124 gaaaattaaataaggatagtcccatagagctcataacaaagagtctgacacaagggagaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 gaaaattaaataaggatagtcccatagagctcataacaaagagtctgacacaagggagaa 750

                                                                       
Query: 184 tattcattgtcactgaaagatcagtcagacatactgttctcttgctacttagaagtctca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tattcattgtcactgaaagatcagtcagacatactgttctcttgctacttagaagtctca 690

                                                                       
Query: 244 gcagaatggctgtggtccttattcagttagcagtgcatgaacatggattgagaagtgtat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gcagaatggctgtggtccttattcagttagcagtgcatgaacatggattgagaagtgtat 630

                                                                       
Query: 304 acaggcattaaagaagaaagcacataaaatcattctttttttgtggattctgtgtgattt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 acaggcattaaagaagaaagcacataaaatcattctttttttgtggattctgtgtgattt 570

                                                                       
Query: 364 atctatactttacctgacaaatgcatccagtagaattcttagttttgtccacgagaaaaa 423
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 atctatacttttcctgacaaatgcatccagtagaattcttagttttgtccacgagaaaaa 510

                                                                       
Query: 424 cttattttagaagttataatctctagtattatttctaaaattaaaactggtcaacagggg 483
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 509 cttattttagaagttataatctctggtattatttctaaaattaaaactggtcaacagggg 450

                                                                       
Query: 484 agaaagtagatataaatgctttctacaccttcaaaattattgtcagaagcatattaaaat 543
           |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 449 agaaagtagatataaatgctctctacaccttcaaaattattgtcagaagcacattaaaat 390

                         
Query: 544 tgaacagaaaaatg 557
           ||||||||||||||
Sbjct: 389 tgaacagaaaaatg 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)