Query= MSMg01no402_n01.b1 MSMg01no402_n01.b1 CHROMAT_FILE:
MSMg01no402_n01.b1 PHD_FILE: MSMg01no402_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:51 2005
(519 letters)
>mm_chr9_78728513_78729432
Length = 920
Score = 897 bits (464), Expect = 0.0
Identities = 512/536 (95%), Gaps = 19/536 (3%)
Strand = Plus / Plus
Query: 1 ttgctgtgcataatttattcttgacatagttgattcaccaaaaatgtcattcatacagac 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 187 ttgctgtgcataatttattcttgacatagttgattcaccaaaaatgccattcatacagac 246
Query: 61 gctggggtaacttggtctaagtgtgaagttacctccttttctacaatatctcaggatatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gctggggtaacttggtctaagtgtgaagttacctccttttctacaatatctcaggatatc 306
Query: 121 ttttcaatgaatcttttgttgttctttgtcagaagagctggtcctctccactgcaggact 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ttttcaatgaatcttttgatgttctttgtcagaagagctggtcctctccactgcaggact 366
Query: 181 aatcctatgcctgcagtagagctctttataatctccgtatgcctcattatttcagcaagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aatcctatgcctgcagtagagctctttataatctccgtatgcctcattatttcagcaagc 426
Query: 241 attccatcccttttcagtgctgttcttacccccacccccaccccc-gccctttttcttgg 299
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 427 attccatcccttttcagtgctgttcttacccccacccccaccccccgccctttttcttgg 486
Query: 300 tagcttttt-cacccttccaaacacctgcatttttcccaagggtttctgccagtctttca 358
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 487 tagcttttttcacccttccaaacacctgcatttttcccaagggtttatgccagtctttca 546
Query: 359 gctttgcattcattgaattatcaattt---c---------ttcaccaaagttatcaaatg 406
||||||||||||||||||||||||||| | |||||||||||| |||||||
Sbjct: 547 gctttgcattcattgaattatcaatttattcaccaatttattcaccaaagttctcaaatg 606
Query: 407 aatgacttttttttt--aaagcttt-ccccctttgttttctaaaaccagttagaaatgct 463
||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||
Sbjct: 607 aatgactttttttttttaa--cttttccccctttgttttctaaaaccagttagaaatgct 664
Query: 464 ttcttcaagggtacattttgatctcctaatgagtaaacagtgttcctttctcaagt 519
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 665 ttcttcaagggtacattttgatctcctaatgagtaaacagtgtccctttctcaagt 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 920
Length adjustment: 10
Effective length of query: 509
Effective length of database: 910
Effective search space: 463190
Effective search space used: 463190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no402_n01.g1 MSMg01no402_n01.g1 CHROMAT_FILE:
MSMg01no402_n01.g1 PHD_FILE: MSMg01no402_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:51 2005
(519 letters)
>mm_chr9_78924971_78925890
Length = 920
Score = 872 bits (451), Expect = 0.0
Identities = 487/499 (97%), Gaps = 1/499 (0%)
Strand = Plus / Minus
Query: 1 aaacactgaacaagatcatatgttgactaagatttttaattttctatgtttctttcctca 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 499 aaacactgaacaagatcatatgctgactaagatttttaattttctatgtttctttcctca 440
Query: 61 gtttattctgttttatctttttaaacctcatgctggtagctataatggacttgaagttac 120
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 439 gtctattctgttttatctttttaaacctcatgctggtaggtataatggacttgaagttac 380
Query: 121 tgatcttcttcattcgtcattcctaacacagctcttccgaataaagttccttcctttgtt 180
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgatcctcttcattagtcattcctaacacagctcttccgaataaagttccttcctttgtt 320
Query: 181 cattgtcatttgttgtctctttaattggtatattgggacaagcaatcaagcctgaca-tt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 319 cattgtcatttgttgtctctttaattggtatattgggacaagcaatcaagcctgacattt 260
Query: 240 tgggtgacaaaagctttatattggccttttccctataatttctgttatgttgtgagctct 299
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 259 tgggtgacaagagctttatattggccttttccctacaatttctgttatgttgtgagctct 200
Query: 300 cttagtttcatttaaattgcagtgattaaatattctgacaaaagcaacttagggaagaac 359
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 199 cttagtttcatttaaattgctgtgattaaatattctaacaaaagcaacttagggaagaat 140
Query: 360 ggttttattttatttcaaggttacaactcatcatagcagagaaatcaaggagacaggaac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 ggttttattttatttcaaggttacaactcatcatagcagagaaatcaaggagacaggaac 80
Query: 420 tacctaacatccacagataagagcagagagaaatgaatgcatgctctctcacctgtttgc 479
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 79 tacctaacatccacagataagagcagagagaaatgaatgcatgctcgctcacctgtttgc 20
Query: 480 ttgctcattatgctcagtg 498
|||||||||||||||||||
Sbjct: 19 ttgctcattatgctcagtg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 920
Length adjustment: 10
Effective length of query: 509
Effective length of database: 910
Effective search space: 463190
Effective search space used: 463190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
