BAC Information

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BAC

Clone NameMSMg01-403N22
Chromosome9 (Build37)
Map Location 20,601,703 - 20,602,089
singlet/doubletsinglet
Overlap geneCol5a3
Upstream geneOlfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2
Downstream geneRdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403N22.T7 (MSMg01no403_n22.b1)MSMg01-403N22.TJ (MSMg01no403_n22.g1)
ACCAG502678AG502679
length813783
length of high quality
(start - end)
394 (40 - 433)62 (69 - 130)
definitionCHROMAT_FILE: MSMg01no403_n22.b1 PHD_FILE: MSMg01no403_n22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:19 2005CHROMAT_FILE: MSMg01no403_n22.g1 PHD_FILE: MSMg01no403_n22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
CTGGGATATAAAAAGAAGGTGAAAGAGTCACAAAAAGAGAGATGGACAAT
AAAACTGGACAAGGGAGGACTGTGGCTCAGCCCCCCCACACCCCATTGTC
AAGACAGAGGCTTGAACCTGGGAGCCGTGGTTTCCTTGCTGTCCTGGGGG
TCCTGGTTCTCCAGGAGGACCCTGTGGGGGAAGGGTAGGTTCAGTGAAGC
AGGAAGGCGACAGAAGGTGGAGGGTAAGGGAAGTTCCAAGTAGACAAGGC
TATAAAGATCATGGGTTTGGAGAGTCAGAAGGGCAAAAACAGATGGTAGG
ACGCTTACCACGTTGCCTTTGGCCCCTGGTGCGCCATCACTCCCTGTCAC
ACCCTGCGAGGACAGAGGATGTGAGACCAGGACAGATCAGAACCCGGGTG
TGAGCTGCTGAGAAATATGTATAAAGGAGACAGCAGCACCAGAAAGCTCC
TTCCCGCTCGTGAGATGCTCACAGGGTAAAGGGCCTTTGTGCATTATCAA
CGATACCCCCGATTCCAGCCCCCCCGAATCCCCTTAAAATTCCTTATTAT
CATCCCCCGTTTTTTGTTTTCCCCCCGCCACACGGTGAAGTTTCAAAATG
TTTTTTCTCCCATTCTCCGTGCTCCTCCCACTTGTTAACTCTCCTTACCC
CTCTTCCCACCCTCTTTTTCTCCCTTCCTCCTTTTTTTCCCTCTTTTTTC
CCTTTTTTCCTTTCCTTCTCCTCCCTCCTTCTACTTAGTTCCCCCCTTTT
CTCGTTATTTTCT
TTTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAGGCCAACCTGATCTACGTAATAAGTTTCTG
GTCAACCCGGATTACACAGTAAGACCCTGTNCCANNAACAAAACAAAAAG
AGAAGATAGTTCCCTGAGGGCTANACNGTGACAGTCGATTGAAATCCCAA
GATAAAATAATCTGCCGCCGGAAGGTGGNNNNCGGGGGGGGTTNNNNNNT
TNNNNTNNNNNNNNNNNNNTTTTTTTNNNTNNNNNNNNNNNNNNNGTTTN
NTTTTTTTTTTTTTTTTTTTTNNTTTTNNNNNNNNTNNTTTNNNNNNNNN
NNNNNNNNTTTTTTTTTTTTGTTTTTTTTTTGTTTTCTCTTNNNNNNNTT
TTTTTTTTTNTTCTTCTCCTTTCGATTGCCGCGGGGGCGTGGGAGGCAGG
GCGGTGGAGGGTGACGGGGGTGCGCCGTGGGGGTGTGCAGTGGAGCAGGT
GCAGGGAGAGTGCGGGGGTGGGTGGGGTGAGGGGGAGGTGGTGGGGCGTG
GGAGGTGGTGGCAGGGGTGGGTGGGGAGGCGCGGGGTGGGGGGTGAGGGG
GGTGGGTGAGGTGGCGGGGGGTGGAAGAGGCGGGAGTGGAGGCGGGTGGG
GAGGACGGGTGGGGGCGGGGCGTGCGGAGAGCGAGGGAAATAAAATNNNN
NNNNNNNTNTNCNNNNNTTTTTTTTTNNNCCTTTTCTTTCTCCTCTTGTC
GTACCGCTTGCGGGGAGGAGGAGAAACGAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_n22.b1 MSMg01no403_n22.b1 CHROMAT_FILE:
MSMg01no403_n22.b1 PHD_FILE: MSMg01no403_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:19 2005
         (394 letters)



>mm_chr9_20601500_20602292
          Length = 793

 Score =  727 bits (376), Expect = 0.0
 Identities = 385/388 (99%), Gaps = 1/388 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccctgggatataaaaagaaggtgaaagagtcacaaaaagagagatggacaataa 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccctgggacataaaaagaaggtgaaagagtcacaaaaagagagatggacaataa 263

                                                                       
Query: 64  aactggacaagggaggactgtggctcagcccccccacaccccattgtcaagacagaggct 123
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 264 aactggacaagggaggactgtggctcagcccccc-acaccccattgtcaagacagaggct 322

                                                                       
Query: 124 tgaacctgggagccgtggtttccttgctgtcctgggggtcctggttctccaggaggaccc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgaacctgggagccgtggtttccttgctgtcctgggggtcctggttctccaggaggaccc 382

                                                                       
Query: 184 tgtgggggaagggtaggttcagtgaagcaggaaggcgacagaaggtggagggtaagggaa 243
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgtgggggaagggtgggttcagtgaagcaggaaggcgacagaaggtggagggtaagggaa 442

                                                                       
Query: 244 gttccaagtagacaaggctataaagatcatgggtttggagagtcagaagggcaaaaacag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gttccaagtagacaaggctataaagatcatgggtttggagagtcagaagggcaaaaacag 502

                                                                       
Query: 304 atggtaggacgcttaccacgttgcctttggcccctggtgcgccatcactccctgtcacac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atggtaggacgcttaccacgttgcctttggcccctggtgcgccatcactccctgtcacac 562

                                       
Query: 364 cctgcgaggacagaggatgtgagaccag 391
           ||||||||||||||||||||||||||||
Sbjct: 563 cctgcgaggacagaggatgtgagaccag 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 793
Length adjustment: 9
Effective length of query: 385
Effective length of database: 784
Effective search space:   301840
Effective search space used:   301840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)