Query= MSMg01no404_a05.b1 MSMg01no404_a05.b1 CHROMAT_FILE:
MSMg01no404_a05.b1 PHD_FILE: MSMg01no404_a05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:31 2005
(431 letters)
>mm_chr9_71085439_71086272
Length = 834
Score = 717 bits (371), Expect = 0.0
Identities = 417/433 (96%), Gaps = 5/433 (1%)
Strand = Plus / Plus
Query: 3 ttcaagctcac--agggaacagagcattgtgctttatcacaacttctgatgagcatctta 60
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ttcaagctcacggagggaacagagcattgtgctttatcacaacttctgatgagcatctta 262
Query: 61 ccaggcgcctgctggtgttgtgcctgctcttttggacctcagatataaacgaacgagaat 120
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 263 ccaggcacctgctggtgttgtgcctgctcttttggacctcagatataaatgaacgagaat 322
Query: 121 ggcaaggccagtggaaatgacagtggactcaatcacagcatc-gtttctcaggtcgttga 179
|||||||||||||||||||||||||||||| ||||||||| | ||||||||| | || ||
Sbjct: 323 ggcaaggccagtggaaatgacagtggactcgatcacagca-ctgtttctcagtttgtcga 381
Query: 180 taggagattcctaaagtatacttt-caggctgtaccccagaaactcatccaggaagtgtc 238
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 382 taggagattcctaaagtatacttttcaggctgtaccccagaaactcatccaggaagtgtc 441
Query: 239 tgtctaggggcaggacaggtttgtgtcagagatgttatatatgagcctttttttggttac 298
|||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 442 tgtcaaggggcaggacgggtttgtgtcagagatgtcatatatgagcctttttttggttac 501
Query: 299 caaggctgagaccctcaagacaacactgaaagctagaaaagtgtctagcaagtcacttgc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 caaggctgagaccctcaagacaacactgaaagctagaaaagtgtctagcaagtcacttgc 561
Query: 359 taggtatttagcatgaagccagggttcgaacacaagcagcctttctccctgttccttctg 418
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 562 taggtatttagcataaagccagggttcgaacaccagcagcctttctccctgttccttctg 621
Query: 419 cttctcctcccaa 431
|||||||||||||
Sbjct: 622 cttctcctcccaa 634
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 834
Length adjustment: 9
Effective length of query: 422
Effective length of database: 825
Effective search space: 348150
Effective search space used: 348150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_a05.g1 MSMg01no404_a05.g1 CHROMAT_FILE:
MSMg01no404_a05.g1 PHD_FILE: MSMg01no404_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:31 2005
(411 letters)
>mm_chr9_71256618_71257428
Length = 811
Score = 772 bits (399), Expect = 0.0
Identities = 408/411 (99%)
Strand = Plus / Minus
Query: 1 tctgaaataattgctcttttgtaatattaggaatatctcaatggtgacagtttggaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tctgaaataattgctcttttgtaatattaggaatatctcaatggtgacagtttggaaata 552
Query: 61 ctttagcttttaaatgctgaaaccaaatgacaaataaacccttgtgaatcatgttccaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ctttagcttttaaatgctgaaaccaaatgacaaataaacccttgtgaatcatgttccaag 492
Query: 121 aaggacggtgaacattctccctacagctgttcatgatataatatcaaaatgagaaacatg 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aaggacagtgaacattctccctacagctgttcatgatataatatcaaaatgagaaacatg 432
Query: 181 aacgtgtgaaacagcaagcccgtgctgctctgccttgctcgttctgcagagagctctaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aacgtgtgaaacagcaagcccgtgctgctctgccttgctcgttctgcagagagctctaat 372
Query: 241 gtgaaggcatcctcaggaagatgcagcagccgtatttcatccgatcatcatttatccaaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 371 gtgaaggcatcctcaggaagatgcagcagccgtatttcatccgatcatcatttagccaaa 312
Query: 301 ccacaacaatactcctggggcctcttcagcttcactgacaaggcctgtcatttgagttgc 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 311 ccacaacaatactcctggggcctcttcagcttcactgacagggcctgtcatttgagttgc 252
Query: 361 tgcaaatgggatcctccacagggaggctaactccagctctctgtggccaga 411
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgcaaatgggatcctccacagggaggctaactccagctctctgtggccaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space: 322404
Effective search space used: 322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
