Query= MSMg01no404_j14.b1 MSMg01no404_j14.b1 CHROMAT_FILE:
MSMg01no404_j14.b1 PHD_FILE: MSMg01no404_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:20 2005
(368 letters)
>mm_chr9_119491188_119491955
Length = 768
Score = 632 bits (327), Expect = 0.0
Identities = 355/365 (97%), Gaps = 5/365 (1%)
Strand = Plus / Plus
Query: 7 gaattcccttaacatctctaatgtcaccacttccagccccagggttaacgacatcaaatt 66
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcccttaacagctctaatgtcaccacttccagccccagggttaacgacatcaaatt 266
Query: 67 ctcttggctagatttgatttgcctgtttgtttggtttttttccctctttacatatttact 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctcttggctagatttgatttgcctgtttgtttggtttttttccctctttacatatttact 326
Query: 127 catttcatttgtggtgtgtgct-tgtgtgtgcacg--cacgcacgtgagcatatgtcaat 183
|||||||||||||||||||| | ||||||||| || |||||||||||||||||||||||
Sbjct: 327 catttcatttgtggtgtgtg-tgtgtgtgtgcgcgtgcacgcacgtgagcatatgtcaat 385
Query: 184 gtctgtgtttgtaagccggaggataacttgcaagagtcagttctgcctttccactatgtg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gtctgtgtttgtaagccggaggataacttgcaagagtcagttctgcctttccactatgtg 445
Query: 244 agttctggggcctaaactcgggttcccattcttggtgttatgcaggagtctttacctacc 303
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 446 agttctggggcctaaactcgggttcccattcttggtggcaggcaggagtctttacctacc 505
Query: 304 caaacatcttgtttggttctgcttgctctaaatatgtttattgatgaagatggagtgtgc 363
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 caaacatcttgtt-ggttctgcttgctctaaatatgtttattgatgaagatggagtgtgc 564
Query: 364 ctgtg 368
|||||
Sbjct: 565 ctgtg 569
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space: 272481
Effective search space used: 272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_j14.g1 MSMg01no404_j14.g1 CHROMAT_FILE:
MSMg01no404_j14.g1 PHD_FILE: MSMg01no404_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:20 2005
(391 letters)
>mm_chr9_119661535_119662325
Length = 791
Score = 474 bits (245), Expect = e-138
Identities = 283/303 (93%), Gaps = 14/303 (4%)
Strand = Plus / Minus
Query: 1 tctccgtccagtgtgggtggtaacagatggggcaggctaaataactcctgcccttataga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tctccgtccagtgtgggtggtaacagatggggcaggctaaataactcctgcccttataga 244
Query: 61 tccttgtgtagaagttattctgggggggaccttatagatctccttaatcaaaagtaa-tt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 243 tccttgtgtagaagttattctgggggggaccttatagatctccttaatcaaaagtaattt 184
Query: 120 tttcctacaatatagtctggctacacgttgccctttcttatctcctcccagattctcata 179
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 183 tttcctacaatatattctggctacacgttgccctttcttatcttctcccagattctcata 124
Query: 180 accttctcactcattcaaaccctc---------gtctatctgtctg----tctctcaaac 226
|||||||||||||||||||||||| |||| |||||||| ||||||||||
Sbjct: 123 accttctcactcattcaaaccctctgtctgtctgtctgtctgtctgtctctctctcaaac 64
Query: 227 aggcaaataaaaaaggagacaattaatgaaaatgaaatatacaaggaaacaggtaaatgc 286
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 63 aggcaaataaaaaagaagacaaaaaatgaaaatgaaatatacaaggaaacaggtaaatgc 4
Query: 287 aca 289
|||
Sbjct: 3 aca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space: 298724
Effective search space used: 298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
