BAC Information

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BAC

Clone NameMSMg01-404M10
Chromosome9 (Build37)
Map Location 111,777,722 - 111,778,136
singlet/doubletsinglet
Overlap genenone
Upstream geneTmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac
Downstream gene4930545L08Rik, Arpp21, LOC100039341, LOC620760, LOC100043800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404M10.T7 (MSMg01no404_m10.b1)MSMg01-404M10.TJ (MSMg01no404_m10.g1)
ACCAG503364AG503365
length763764
length of high quality
(start - end)
119 (114 - 232)415 (71 - 485)
definitionCHROMAT_FILE: MSMg01no404_m10.b1 PHD_FILE: MSMg01no404_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:34 2005CHROMAT_FILE: MSMg01no404_m10.g1 PHD_FILE: MSMg01no404_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGAATTCTCATAA
TTCACACAACACAGAACATTTATGGTATCTTGTCAATGAAACATGCTAGC
CACAATAAGATCAATGTTACATGAGATCTGTAGAACCCACGATGGCTGGA
TTTATTTTTATTTTTATTTTATTTATTTTTTTGGATTTATTTTTAAAAGT
GAGTAGAGTTATAGTATTCATCTGGAACGTATAGGGAGGCTTATGTTGGG
TAACCATTGTTGACCAAGGATAGAGTTTCACTGAGGATACAACGTCTAAG
AGACTTAGGTCCTTGGACGCTCGCACAACCTTGTGAACATACACGACTGC
TCCAACTGTATGCTCCAAAAGGAAAACCCTATGTTCTGTGTATTTTACCA
TACATTCTTGTTTGGACTTAAATTTCCATGCCACCAATCATTATGAAAAG
AAGCTAATTCAGGAACTCATGGCAAGATGCTGGTGGTCACTGAAGCACAG
GCCATGGAGGTATGTTTGCTTCCTTGCTTGCTTCCAGTACCTTGATCAGT
CACCTCTCTTCTATAACCTATGACTACTTGTCCTGGTGTGTTTTCTTGCT
CACCGTTTTGTTTTGTCCCCCCCCCTTTCTTGTTCCATACCCCTCTCTCT
ATTTTCTCTCTGATCATTCTGTATGCAAGGAGCTTTATTTTTCTTATTTT
GTCCCTCCTCCCCCGCTCCAATTTATTTTAATACCATTGTTTACCCTCAC
TTCTTTCCTTCCN
GATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TTTACCGACGGAATTCTTGNGTTCCTTCCCTTCAATGGTTCAGTGAGACA
AAGCGAGCTTGGCAAATTCATTCCAAAAATAAGTCCCACTCCCAGTTTTA
CCAATTAATTCTTTCTTTTTTCACATGTAACACTTTCAAGAAAATCAGTT
AAAGCTTAAAAAAAAAACAAAAACAAAGTTCGGGTTCACATTTATTTGTT
TCAGAAATAAATGTGGTGGCAGGGCACACACAGGAAGGTGAGTATCTTTC
CCAGAACTTGCTTTATTGGCCACATTAAGCATCGGCATGGGTCACTAAAA
TATGTCACTGAAATCCTACACCTGAGTATAATGTGGTACCTTGAGGGAGA
AGGGTGTTCCAATGGAGCAGGTCTGTGGTTTAAAGGCATCGGCAGGGATT
TTGCTCTTACATTGCCATCCTCACTGATAATCACAGAATAGCAGAATAAG
AGAATTTCACTTGTTAGGAGGGCCACACTATGAGTAAAGATTTGCCAATT
TGTTTGCAGCAGACAAATCTAATCTTATTCTCTTGCCGAGCACATATTTT
TCACCTTCCACGTCATTTCTTTCTGTTCCTCAACCAAAAAGGCCTAACCT
CCTACTTACCATGTAATTTTCCTTCCCAATGTAATTCGAATTTAAAACTG
TAAACTCCCTTTCTGCAACTTTATTAAACTTGGTCTCTTTCTCATATTTT
TTAACCCCATATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_m10.g1 MSMg01no404_m10.g1 CHROMAT_FILE:
MSMg01no404_m10.g1 PHD_FILE: MSMg01no404_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:34 2005
         (415 letters)



>mm_chr9_111777522_111778336
          Length = 815

 Score =  717 bits (371), Expect = 0.0
 Identities = 404/415 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttccttcccttcaatggttcagtgagacaaagcgagcttggcaaattcattccaaaaat 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 615 gttccttcccttcaatggttcagtgagacaaaacgagcttggcaaattcattccaaaaat 556

                                                                       
Query: 61  aagtcccactcccagttttaccaattaattctttcttttttcacatgtaacactttcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aagtcccactcccagttttaccaattaattctttcttttttcacatgtaacactttcaag 496

                                                                       
Query: 121 aaaatcagttaaagcttaaaaaaaaaacaaaaacaaagttcgggttcacatttatttgtt 180
           |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 495 aaaaacagttaaagcttaaaaaaaaaacaaaaacaaagttcaggttcacatttatttgtt 436

                                                                       
Query: 181 tcagaaataaatgtggtggcagggcacacacaggaaggtgagtatctttcccagaacttg 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 435 tcagaaataaatgtggtgacagggcacacacaggaaggtgagtatctttcccaaaacttg 376

                                                                       
Query: 241 ctttattggccacattaagcatcggcatgggtcactaaaatatgtcactgaaatcctaca 300
           |  || |||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 375 caatagtggccacattaagcattggtatgggtcactaaaatatgtcactgaaatcctaca 316

                                                                       
Query: 301 cctgagtataatgtggtaccttgagggagaagggtgttccaatggagcaggtctgtggtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cctgagtataatgtggtaccttgagggagaagggtgttccaatggagcaggtctgtggtt 256

                                                                  
Query: 361 taaaggcatcggcagggattttgctcttacattgccatcctcactgataatcaca 415
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 taaaggcattggcagggattttgctcttacattgccatcctcactgataatcaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)