Query= MSMg01no404_p19.b1 MSMg01no404_p19.b1 CHROMAT_FILE:
MSMg01no404_p19.b1 PHD_FILE: MSMg01no404_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:50 2005
(595 letters)
>mm_chr10_21610003_21610995
Length = 993
Score = 1060 bits (548), Expect = 0.0
Identities = 581/592 (98%), Gaps = 4/592 (0%)
Strand = Plus / Plus
Query: 5 gaattctgaggat-tactacagtgtagctgccagtttcacactggggaggacagaagatg 63
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgaggaactactacagtgtagctgccagtttcacactggggaggacagaagatg 264
Query: 64 ggctccttcctgttcaaagagcttctcgaagtcaaggtcagacagtgagaagaggaagat 123
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 ggctccttcctgttcaaagagcttctcgaggtcaaggtcagacagtgagaagaggaagat 324
Query: 124 ggaagcagggcaggaagactaaaaactcaaggttatcctcattcgtagtgagtctgggac 183
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 ggaagcagggcaggaagaccaaaaactcaaggttatcctcattcatagtgagtctgggac 384
Query: 184 agacaagtcagtctcacaaaatgaagaagtacttgctagcggttcccctatacagtgatc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agacaagtcagtctcacaaaatgaagaagtacttgctagcggttcccctatacagtgatc 444
Query: 244 aaagtgtcaaaggattgagagaaagaaggaaaaacatagtcaaacgctagcaatcatgct 303
||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct: 445 aaagtgtcaaaggattgagagaaagaaagaaaaa-a-agtcaaacgctagcaatcatgcc 502
Query: 304 aatggaatattgtttttcttaggcagaagtaggtagcctgaagttctgtattgtttcttt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aatggaatattgtttttcttaggcagaagtaggtagcctgaagttctgtattgtttcttt 562
Query: 364 tttttttttaagatttaattttattattttaattgtctgtgcgtgcacatacccctgcat 423
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tttttttt-aagatttaattttattattttaattgtctgtgcgtgcacatacccctgcat 621
Query: 424 gtagctatgtacacctgagtgcatgtgctcactgaggccagaggtgtcgaatccttctac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gtagctatgtacacctgagtgcatgtgctcactgaggccagaggtgtcgaatccttctac 681
Query: 484 agctatagttacagttgatggtgagccatctgacattggggccaaggaccagtgagccat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 agctatagttacagttgatggtgagccatctgacattggggccaaggaccagtgagccat 741
Query: 544 caccctagcccactctgccccatctttatatatgacacattactttttctat 595
|||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 742 caccctagcccactctgccccatctttatacatgacacattactttttctat 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 993
Length adjustment: 10
Effective length of query: 585
Effective length of database: 983
Effective search space: 575055
Effective search space used: 575055
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_p19.g1 MSMg01no404_p19.g1 CHROMAT_FILE:
MSMg01no404_p19.g1 PHD_FILE: MSMg01no404_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:51 2005
(619 letters)
>mm_chr9_3287245_3288265
Length = 1021
Score = 841 bits (435), Expect = 0.0
Identities = 528/561 (94%), Gaps = 11/561 (1%)
Strand = Plus / Minus
Query: 64 tgatcctcaagtgccacctttctccctctactgcccaatcac-agaatctattgttttat 122
|||||||||||| ||||||||||||||||||||||||||||| || |||||| |||||||
Sbjct: 1020 tgatcctcaagtcccacctttctccctctactgcccaatcacaag-atctatcgttttat 962
Query: 123 tgacaagttaaactgggga---gcaaggtttacatagcatcactcagggtacttgagaat 179
||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 961 agaccagttaaactggggaggggcaaggtttacatagcatcactcagggtacttgaggat 902
Query: 180 ctgctcttcaggggtaaccagatcttgggagccagaatgtaggtagcatttaaatacaag 239
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 901 ctgctcttcaggggtaaccagatctcgggatccagaatgtaggtagcatttaaatacaag 842
Query: 240 cagcaccatactaatccctgacaataactc-ttccttatctgaccaatcaacatctttac 298
||| |||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 841 cagaaccagactaacccctgacaataactctttccttatctgaccaatcaacatctttac 782
Query: 299 ctaaaatacaaccagtactaatattttcagatcctagcacccatagctatggcttctggt 358
|||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 781 ctaatatacaaccagtacaaatattttcatatcctagcacccatagctatggcttctggt 722
Query: 359 aaaatgaaaatatctgtcacattcttacaaactcaagacagaaagtgagcagattatcca 418
|||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 721 aaaatgtaaatatgtgtcacattcttataaactcaagacagaaagtgagcagattatcca 662
Query: 419 gtgttcctgc--aacagtccactatcaaatttgtaagaatttaagggttgtcaataacag 476
|||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 661 gtgttcct-ctaaacagtccactatcaaatttgtaagaatttaagggatgtcaataacag 603
Query: 477 accaacagagaatgacactaaacaaagacaacacctacaatatactatattccaaagtta 536
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 602 tccaacagagaatgacactaaataaagacaacacccacaatatactatattccaaagtta 543
Query: 537 caaccataaattaag-tgttcaaagaaagttacatgacctttatatttgaaggactttta 595
||||||| ||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct: 542 caaccatgaattaagct-ttaaaagaaagttacatgacctttatatttgaaggactttta 484
Query: 596 aaataagagtctcatttggaa 616
|||||||||||||||||||||
Sbjct: 483 aaataagagtctcatttggaa 463
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1021
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1011
Effective search space: 615699
Effective search space used: 615699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
