Query= MSMg01no405_g21.b1 MSMg01no405_g21.b1 CHROMAT_FILE:
MSMg01no405_g21.b1 PHD_FILE: MSMg01no405_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:24 2005
(459 letters)
>mm_chr9_78881368_78882226
Length = 859
Score = 847 bits (438), Expect = 0.0
Identities = 452/460 (98%), Gaps = 8/460 (1%)
Strand = Plus / Minus
Query: 4 ggaattccaggatt--atttcc--ccaaaaatagcatcaatattaagttttccacatcaa 59
|||||||||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct: 827 ggaattccaggattaga----cagccaaaaatagcatcaatattaagttttccacatcaa 772
Query: 60 actttttgtttttgtttttgtttctgaaacagggtcttgtatatcccaggttggcctcaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 actttttgtttttgtttttgtttctgaaacagggtcttgtatatcccaggttggcctcaa 712
Query: 120 actcattgtgtagctatggctttgaattccaaatcttattgattcaaccttctttgttga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 actcattgtgtagctatggctttgaattccaaatcttattgattcaaccttctttgttga 652
Query: 180 catcaaatattatgtgtgacatttctctctggaaatatgtaccaaactattcagaagaag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 catcaaatattatgtgtgacatttctctctggaaatatgtaccaaactattcagaagaag 592
Query: 240 aagaataaggaaatatcatatctacaattggcaggcaatagaatagaagatgcttttaca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 aagaataaggaaatatcatatctacaattggcaggcaatagaatagaagatgcttttaca 532
Query: 300 ttatacttaaaatttctgtttgaaacttttgaaaaatgttaacctttcttatttatctat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ttatacttaaaatttctgtttgaaacttttgaaaaatgttaacctttcttatttatctat 472
Query: 360 catcagctaatttaaataaagatctgcaaatatgacaattgaatattaaaagtaaaatta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 catcagctaatttaaataaagatctgcaaatatgacaattgaatattaaaagtaaaatta 412
Query: 420 ttttatcctctgaaattattaaatattacaagtaagatga 459
||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ttttatcctctgaaattattaaatattacaagtaagatga 372
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no405_g21.g1 MSMg01no405_g21.g1 CHROMAT_FILE:
MSMg01no405_g21.g1 PHD_FILE: MSMg01no405_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:25 2005
(465 letters)
>mm_chr9_78708100_78708964
Length = 865
Score = 810 bits (419), Expect = 0.0
Identities = 450/463 (97%), Gaps = 7/463 (1%)
Strand = Plus / Plus
Query: 5 ttgaaagacttcttgttagcctagattcttttctgtatcagcgtgcattagccacaatgg 64
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 ttgaaagacttcttgttagcctagattcttttctgtatcagcgtgcatttgccacaatgg 264
Query: 65 tgacggattctgatggagtccagggctgtttcatgcaggcacagagcatgcccaaatcat 124
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgacagattctgatggagtccagggctgtttcatgcaggcacagagcatgcccaaatcat 324
Query: 125 acccacgagtcccatccttctgacctctattaatcacctctctacttcaggccaacactg 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acccacgagtcccatccttctgacctctattaatcacctctctacttcaggccaacacta 384
Query: 185 -----tattttattttttaggaacttcttaggataaggacgtgcggtactggtctttttt 239
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 385 aattttattttattttttaggaacttcttaggata-ggacatgcggtactggtctttttt 443
Query: 240 tgtaactggcctatttcatttggtagaggacttccaatcctgtcagttttgttgtgagtg 299
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 444 tgtaactggcctatttaatttggtagaggacttccaatcctgtca-ttttgttgtgagtg 502
Query: 300 atatttcattattgcttatggttaagtaattttcatttatgtgtatcttcacattatctt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atatttcattattgcttatggttaagtaattttcatttatgtgtatcttcacattatctt 562
Query: 360 tacgaaaaaatatgatagctgtgcatgatagtgccgcattgaaatgggcgaggagacatc 419
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tacgcaaaaatatgatagctgtgcatgatagtgccgcattgaaatgggcgaggagacatc 622
Query: 420 tttttggcatgctgaattcatttgcattgtgtactccacactg 462
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tttttggcatgctgaattcatttgcattgtgtactccacactg 665
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space: 389025
Effective search space used: 389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
