BAC Information

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BAC

Clone NameMSMg01-405K05
Chromosome9 (Build37)
Map Location 22,175,494 - 22,176,033
singlet/doubletsinglet
Overlap geneAnln
Upstream geneIlf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603
Downstream gene9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805, Bmper
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405K05.T7 (MSMg01no405_k05.b1)MSMg01-405K05.TJ (MSMg01no405_k05.g1)
ACCAG504022AG504023
length730730
length of high quality
(start - end)		517 (54 - 570)540 (84 - 623)
definitionCHROMAT_FILE: MSMg01no405_k05.b1 PHD_FILE: MSMg01no405_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:41 2005CHROMAT_FILE: MSMg01no405_k05.g1 PHD_FILE: MSMg01no405_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGTATTTCCAAATTAAATTTTAGCAATGTCCAAAGAA
CCCCAAAACAATATAGGCACTTGGGACACGAAAGCCACAAGACCCAAACT
GGATCTGACGTGAAGCCCTACTCTCTGAGGACCAGCTTTCTTAATACCCA
AAGGTGCTATGCAAGCTGCCAAGGGAAGCAAAGGAAAGCCCCACTCTCAA
TGGAAACTAGCACTGTCTACTTGGACTTAAGGTAAATCAGGCCTGGTGCT
AAGAACCCAGCCAACTACCCAGGGTTGTTGAGCTTGGGGACCTTAGAGGA
GAACCCACTACTGCCACCTCCCTAAACCAGTGTAATTCCTAACTGCATTC
CAAATACTCATCCTTATATACAAAGATAAGTATCGCTCACAACCCACATC
AACGAAGTTTCTTTTGTGGCAAGTGGGACTATACAGAAAACCACAACCAG
TCAAAATGCAGACAAGAAGCGACCCTGGGGTGCCTAGGCTCCTCAATGAA
TACATCAGTGCAAGCCCTGTGCCTGAGCTCAGGAAGCACTGGGAAGGACG
ACAAAGATCTTAAGGGCCAGAGGACCAGAAATCTGCTGTGGAATTGTGTC
TCCTAGAAATGACAGGAAAACTATCACACCCCTGACATCTCAACAGCAAA
GCTTGCTTAAAAAAGCCCTAAAGAACTACC

NTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACAGCTGTGCCTTTT
CCTGCCTTCCAGACACCACCTCCTCTTCCTTCCCTTTAGTGAAATTTCCA
ACAACTCCTGCACTAACTGGCTCTGCTCTCTCTTCAACCTGCCACCCTCC
TCTCCCTGCACTCCTCACCGGACACATCCCAGCAGACTTCACACTTGAAA
CCTCAGCATGCACAAACACCAAACAAACCTCAGCAGACTCATTTCAACCC
TCAGTGCACAAACCCACCCCACGTTTCTCAAACACATTCCATCTCTGCAG
ATTCTAATGACTACAGTACTTTGATAGCTATAATAACTATAGGACTTTAA
ACGAAAATGGCCCCGTAGCACTATGGGAAGTGTGGCCTACCCAGAGGAGG
TGTGTCACTAGGGGTTGGGCTTTTAGGTCTTAGAAGCTCAAGCCTAGGCC
CAGTGGCTCTGTCTTCCTGCTACCTGAAGAACCTGATGTAGAACTCTCAG
CTCCTTCTCCAGCACCACGTCTGTCTGCATGCTGCCATGCTTCTAACCAG
GACGATAAAGAACTGAGCCTCTAAACTGTAAGCTATCCCCAATTAAATAT
TTCCTTTGATAGACTAGTGGTAGCCACGGTGTCTCCTCACAGCAGCACAA
TCCCTACCTAATCAACGACAGGCTCTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_k05.g1 MSMg01no405_k05.g1 CHROMAT_FILE:
MSMg01no405_k05.g1 PHD_FILE: MSMg01no405_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:41 2005
         (540 letters)



>mm_chr9_22175294_22176233
          Length = 940

 Score = 1021 bits (528), Expect = 0.0
 Identities = 537/540 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacagctgtgccttttcctgccttccagacaccacctcctcttccttccctttagtgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacagctgtgccttttcctgccttccagacaccacctcctcttccttccctttagtgaa 260

                                                                       
Query: 61  atttccaacaactcctgcactaactggctctgctctctcttcaacctgccaccctcctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttccaacaactcctgcactaactggctctgctctctcttcaacctgccaccctcctct 320

                                                                       
Query: 121 ccctgcactcctcaccggacacatcccagcagacttcacacttgaaacctcagcatgcac 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctgcactcctcactggacacatcccagcagacttcacacttgaaacctcagcatgcac 380

                                                                       
Query: 181 aaacaccaaacaaacctcagcagactcatttcaaccctcagtgcacaaacccaccccacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacaccaaacaaacctcagcagactcatttcaaccctcagtgcacaaacccaccccacg 440

                                                                       
Query: 241 tttctcaaacacattccatctctgcagattctaatgactacagtactttgatagctataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttctcaaacacattccatctctgcagattctaatgactacagtactttgatagctataa 500

                                                                       
Query: 301 taactataggactttaaacgaaaatggccccgtagcactatgggaagtgtggcctaccca 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taactgtaggactttaaacgaaaatggccccgtagcactatgggaagtgtggcctaccca 560

                                                                       
Query: 361 gaggaggtgtgtcactaggggttgggcttttaggtcttagaagctcaagcctaggcccag 420
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 gaggaggtgtgtcactaggggttgggctttgaggtcttagaagctcaagcctaggcccag 620

                                                                       
Query: 421 tggctctgtcttcctgctacctgaagaacctgatgtagaactctcagctccttctccagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggctctgtcttcctgctacctgaagaacctgatgtagaactctcagctccttctccagc 680

                                                                       
Query: 481 accacgtctgtctgcatgctgccatgcttctaaccaggacgataaagaactgagcctcta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accacgtctgtctgcatgctgccatgcttctaaccaggacgataaagaactgagcctcta 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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