BAC Information

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BAC

Clone NameMSMg01-407H12
Chromosome9 (Build37)
Map Location 108,331,468 - 108,331,711
singlet/doubletsinglet
Overlap geneCcdc36
Upstream geneCacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik
Downstream geneBC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407H12.T7 (MSMg01no407_h12.b1)MSMg01-407H12.TJ (MSMg01no407_h12.g1)
ACCAG505420AG505421
length812755
length of high quality
(start - end)		326 (43 - 368)240 (75 - 314)
definitionCHROMAT_FILE: MSMg01no407_h12.b1 PHD_FILE: MSMg01no407_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:07 2005CHROMAT_FILE: MSMg01no407_h12.g1 PHD_FILE: MSMg01no407_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTCTGTACACCAAGCTGGCCTCGAACTCAGAAATCCACCTGCATCTG
CCTCCCAAGTGCTAGGATTAAAGACGTGCACCACCACGCCCAGCTGAAAT
AAATCTTTAAAAACAACAAAAACTAATTTTGATGGAAAGCCCAGAGATCC
AGGCATGGTAGCACATAACTTTAATTCCAGAACTCTGCAGACTGTAACAA
GGGATCTCTGTGAGTTTGAGGCCAGTCTGGACTACATAACAAGTTGCAGG
ACGCCAGGCAGTGTTGTTCCACGCCTTTAATCCCAGCACTTGGGAGGCAG
ATGCAGGTGGATTTCTGAGTTAGAGGCCAGCCTGGACTACAAAGTGAGTT
CCAGGACAACCACGGCTATACAGAGAACCCCCGTCTCGAAAAACATACAC
TATTACAAACATCTACCTTATCTTCCAATAATTTTCATGCACTGCCAATT
GCACATTGGTGAACTCCCTGTCCTTGAAATATTTTTATCCATATATTTCT
GTGAGGTTTATGAAGCTGAATCCATTTCTTTTCACTCTTGATTGAATTAA
GCTAATCTAATTTTTTTTTTTACTTTGTTTTCAAATCAATACCATTCTCT
TCAACCTACACTCACGCTCCGTTTTGTTTCACTGTATTTTTCTCACACAT
CCTCTTTCTTTTGTATACTCATCAATGCTTCCATAACATTTCTGTATACC
CTCGTGATCTATATGTTTTTATACACATTTCAAACACATTTGGAAATCAT
ATCTCTAATATT

ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGGAAAGTTAAAAGCTCATTCATT
TAACAGGAGACAAAAGACTAGCTCAGGCTGAGGACATTAGCCCATGTGGT
CCTTAGACATAGTTAAGAAAACAGTAAGACTATACCCTCTTCCCCTTTTG
GAGACAGCCTATGTCCAAGGTAACAGTATAAGGACAACATGTCATTGGGG
ATGGCTTACAGGTTTAGTGGTTCAGTCTATTATCACCAAGGTGGGAGCAT
GGCATTGTCCAGGCAGTTTTGGTCCAGGAGGAGCTGAGAGTACTACATCT
TTATTTGAAGGCTGCTAGGAGAAGACTGGCTTCCAGGCAGCTAGGATGAA
GGTCTTAAAGCCCACACCTACATGAGGCTACCTACTCTAATAAGGCCACA
CCTTCTAGTAATGCCACTCCCTGGACCAAGCATATTCAAACCTCCACAGG
TCCCTTAGGACTGAAGTTAAAGATGGTTGGGAGCTGCCAGCCATGTGGGT
GCTAGGAATCTAATCTAGGTTCTTTGGAAAGCAGCCAGGGGTATTAACTG
CTGAACCATCTCCCCCCTATCACAGGTTGAAGAATATCCTCCGGATGGCC
TGGTACTCCTATTTAAATATGGGTGGTCTCCCATTCTAGCACCTTTTTAC
ATATAAGTGTAAGTGGGCCATTGAATCTGGTCCAGCCCCTTCTGTTTTTA
CCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_h12.g1 MSMg01no407_h12.g1 CHROMAT_FILE:
MSMg01no407_h12.g1 PHD_FILE: MSMg01no407_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:07 2005
         (240 letters)



>mm_chr9_108331385_108332024
          Length = 640

 Score =  453 bits (234), Expect = e-132
 Identities = 240/244 (98%), Gaps = 4/244 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggaaagttaaaagctcattcatttaacaggagacaaaagactagctcaggctgagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tctggaaagttaaaagctcattcatttaacaggagacaaaagactagctcaggctgagga 268

                                                                       
Query: 61  cattagcccatgtggtccttagacatagttaagaaaacagtaagactataccctcttccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cattagcccatgtggtccttagacatagttaagaaaacagtaagactataccctcttccc 208

                                                                       
Query: 121 cttttggagacagcctatgtccaaggtaac----agtataaggacaacatgtcattgggg 176
           ||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||
Sbjct: 207 cttttggagacagcctatgtccaaggtaacacttagtataaggacaacatgtcattgggg 148

                                                                       
Query: 177 atggcttacaggtttagtggttcagtctattatcaccaaggtgggagcatggcattgtcc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 atggcttacaggtttagtggttcagtctattatcaccaaggtgggagcatggcattgtcc 88

               
Query: 237 aggc 240
           ||||
Sbjct: 87  aggc 84


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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